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Resource:Arabidopsis Hormone Database

Name: Resource:Arabidopsis Hormone Database
Description: The aim of the Arabidopsis hormone database is to provide a systematic and comprehensive view of morphological phenotypes regulated by plant hormones, as well as regulatory genes participating in numerous plant hormone responses. By integrating the data from mutant studies, transgenic analysis and gene ontology annotation, genes related to the stimulus of eight plant hormones were identified, including abscisic acid, auxin, brassinosteroid, cytokinin, ethylene, gibberellin, jasmonic acid and salicylic acid.

Another pronounced characteristics of this database is that a phenotype ontology was developed to precisely describe all kinds of morphological processes regulated by plant hormones with standardized vocabularies.

To increase the coverage of phytohormone related genes, we have updated our database from AHD to AHD2.0 by adding and integrating several pronounced features: (1) we added 291 newly published Arabidopsis hormone related genes as well as corrected information (e.g. the arguable ABA receptors) based on the recent 2-year literature; (2) we integrated orthologues of sequenced plants in OrthoMCLDB into each gene in the database; (3) we integrated predicted miRNA splicing site in each gene in the database; (4) we provided genetic relationship of these phytohormone related genes mining from literature, which represents the first effort to construct a relatively comprehensive and complex network of hormone related genes as shown in the home page of our database; (5) In convenience to in-time bioinformatics analysis, we also provided links to a powerful online analysis platform Weblab that we have recently developed, which will allow users to readily perform various sequence analysis with these phytohormone related genes retrieved from AHD2.0; (6) we provided links to other protein databases as well as more expression profiling information that would facilitate users for a more systematic analysis related to phytohormone research.

Please help us to improve the database with your contributions.
Other Name(s): AHD, AHD2.0
Parent Organization: Peking University; Beijing; China
Supporting Agency: National Science Foundation China
Grant: NSFC30625003, ED20060047
Resource Type(s): Database, Ontology, Data storage repository, Data analysis service
Resource: Resource
URL: http://ahd.cbi.pku.edu.cn
*Id: nif-0000-02559
PMID: PMID 19015126, 21045062
Keywords: arabidopsis thaliana, hormone, hormone function, hormone gene, microarray data, morphological phenotype, mutant, plant database
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Facts about Resource:Arabidopsis Hormone DatabaseRDF feed
CurationStatuscurated  +
DefiningCitationhttp://ahd.cbi.pku.edu.cn  +
DefinitionThe aim of the Arabidopsis hormone databas The aim of the Arabidopsis hormone database is to provide a systematic and comprehensive view of morphological phenotypes regulated by plant hormones, as well as regulatory genes participating in numerous plant hormone responses. By integrating the data from mutant studies, transgenic analysis and gene ontology annotation, genes related to the stimulus of eight plant hormones were identified, including abscisic acid, auxin, brassinosteroid, cytokinin, ethylene, gibberellin, jasmonic acid and salicylic acid.

Another pronounced characteristics of this database is that a phenotype ontology was developed to precisely describe all kinds of morphological processes regulated by plant hormones with standardized vocabularies.

To increase the coverage of phytohormone related genes, we have updated our database from AHD to AHD2.0 by adding and integrating several pronounced features: (1) we added 291 newly published Arabidopsis hormone related genes as well as corrected information (e.g. the arguable ABA receptors) based on the recent 2-year literature; (2) we integrated orthologues of sequenced plants in OrthoMCLDB into each gene in the database; (3) we integrated predicted miRNA splicing site in each gene in the database; (4) we provided genetic relationship of these phytohormone related genes mining from literature, which represents the first effort to construct a relatively comprehensive and complex network of hormone related genes as shown in the home page of our database; (5) In convenience to in-time bioinformatics analysis, we also provided links to a powerful online analysis platform Weblab that we have recently developed, which will allow users to readily perform various sequence analysis with these phytohormone related genes retrieved from AHD2.0; (6) we provided links to other protein databases as well as more expression profiling information that would facilitate users for a more systematic analysis related to phytohormone research.

Please help us to improve the database with your contributions.
rove the database with your contributions.
GrantCategory:NSFC30625003   +, and Category:ED20060047   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +, Ontology  +, Data storage repository  +, and Data analysis service  +
Idnif-0000-02559  +
Is part ofPeking University; Beijing; China  +
KeywordsArabidopsis thaliana  +, Hormone  +, Hormone function  +, Hormone gene  +, Microarray data  +, Morphological phenotype  +, Mutant  +, and Plant database  +
LabelResource:Arabidopsis Hormone Database  +
ModifiedDate27 May 2011  +
PMID19015126, 21045062  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
Supporting AgencyNational Science Foundation China  +
SynonymAHD  +, and AHD2.0  +