EditFrom NeuroLex
Resource:Ascidian Network for InSitu Expression and Embryological Data
| Name: | Resource:Ascidian Network for InSitu Expression and Embryological Data |
| Description: | Aniseed is a database designed to offer a representation of ascidian embryonic development at the level of the genome (cis-regulatory sequences, gene expression, protein annotation), of the cell (morphology, fate, induction, lineage) or of the whole embryo (anatomy, morphogenesis). Currently, four organism models are described in Aniseed: Ciona intestinalis, Ciona savignyi, Halocynthia roretzi and Phallusia mammillata. This version supports four sets of Ciona intestinalis transcript models: JGI v1.0, KyotoGrail 2005, KH and ENSEMBL, all functionally annotated, and grouped into Aniseedv3.0 gene models. You can explore their expression profiles during normal or manipulated development, access validated cis-regulatory regions, get the molecular tools used to assay gene function, or all articles related to the function, or regulation of a given gene. Known transcriptional regulators and targets are listed for each gene, as are the gene regulatory networks acting in individual anatomical territories. ANISEED is a community tool, and the direct involvement of external contributors is important to optimise the quality of the submitted data. Virtual embryo: The 3D Virtual embryo is available to download in the download section of the website. |
| Other Name(s): | Aniseed database |
| Parent Organization: | Centre National de la Recherche Scientifique |
| Supporting Agency: | CNRS, French Ministry of Research, Marseille-Nice Genopôle, ARC, European Network, EAC, Association pour la Recherche sur le Cancer, Science and Technology Foundation of Portugal |
| Resource Type(s): | Web accessible database, Downloadable database, Software resource, Data storage repository |
| Keywords: | embryology, embryonic, embyo, function, gene, genome, anatomy, annotation, ascidian, assay, cell, ciona intestinalis, ciona savignyi, cis-regulatory, database, development, halocynthia roretzi, model, molecular, morphogenesis, morphology, organism, phallusia mammillata, protein, molecular neuroanatomy resource |
| Grant: | QLK3-CT-2001-01890 |
| Abbreviation: | ANISEED |
| Resource: | Resource |
| URL: | http://www.aniseed.cnrs.fr/ |
| PMID: | PMID 20647237 |
| Id: | nif-0000-10155 |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Curation status: Curated
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Notes
This page uses this default form:Resource
Old url: http://crfb.univ-mrs.fr/aniseed/index.php
| Abbrev | ANISEED + |
| CurationStatus | curated + |
| DefiningCitation | http://www.aniseed.cnrs.fr/ + |
| Definition | Aniseed is a database designed to … This version supports four sets of Ciona intestinalis transcript models: JGI v1.0, KyotoGrail 2005, KH and ENSEMBL, all functionally annotated, and grouped into Aniseedv3.0 gene models. You can explore their expression profiles during normal or manipulated development, access validated cis-regulatory regions, get the molecular tools used to assay gene function, or all articles related to the function, or regulation of a given gene. Known transcriptional regulators and targets are listed for each gene, as are the gene regulatory networks acting in individual anatomical territories. ANISEED is a community tool, and the direct involvement of external contributors is important to optimise the quality of the submitted data. Virtual embryo: The 3D Virtual embryo is available to download in the download section of the website. ad in the download section of the website. |
| ExampleImage |  + |
| Grant | Category:QLK3-CT-2001-01890 + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Web accessible database +, Downloadable database +, Software resource +, and Data storage repository + |
| Id | nif-0000-10155 + |
| Is part of | Centre National de la Recherche Scientifique + |
| Keywords | Embryology +, Embryonic +, Embyo +, Function +, Gene +, Genome +, Anatomy +, Annotation +, Ascidian +, Assay +, Cell +, Ciona intestinalis +, Ciona savignyi +, Cis-regulatory +, Database +, Development +, Halocynthia roretzi +, Model +, Molecular +, Morphogenesis +, Morphology +, Organism +, Phallusia mammillata +, Protein +, and Molecular neuroanatomy resource + |
| Label | Resource:Ascidian Network for InSitu Expression and Embryological Data + |
| ModifiedDate | 18 October 2011 + |
| PMID | 20647237 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| SuperCategory | Resource + |
| Supporting Agency | CNRS +, French Ministry of Research +, Marseille-Nice Genopôle +, ARC +, European Network +, EAC +, Association pour la Recherche sur le Cancer +, and Science and Technology Foundation of Portugal + |
| Synonym | Aniseed database + |
