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Resource:Ascidian Network for InSitu Expression and Embryological Data

Name: Resource:Ascidian Network for InSitu Expression and Embryological Data
Description:

Aniseed is a database designed to offer a representation of ascidian embryonic development at the level of the genome (cis-regulatory sequences, gene expression, protein annotation), of the cell (morphology, fate, induction, lineage) or of the whole embryo (anatomy, morphogenesis). Currently, four organism models are described in Aniseed: Ciona intestinalis, Ciona savignyi, Halocynthia roretzi and Phallusia mammillata.

This version supports four sets of Ciona intestinalis transcript models: JGI v1.0, KyotoGrail 2005, KH and ENSEMBL, all functionally annotated, and grouped into Aniseedv3.0 gene models. You can explore their expression profiles during normal or manipulated development, access validated cis-regulatory regions, get the molecular tools used to assay gene function, or all articles related to the function, or regulation of a given gene. Known transcriptional regulators and targets are listed for each gene, as are the gene regulatory networks acting in individual anatomical territories.

ANISEED is a community tool, and the direct involvement of external contributors is important to optimise the quality of the submitted data.

Virtual embryo: The 3D Virtual embryo is available to download in the download section of the website.
Other Name(s): Aniseed database
Abbreviation: ANISEED
Parent Organization: Centre National de la Recherche Scientifique
Supporting Agency: CNRS, French Ministry of Research, Marseille-Nice Genopôle, ARC, European Network, EAC, Association pour la Recherche sur le Cancer, Science and Technology Foundation of Portugal
Grant: QLK3-CT-2001-01890
Resource Type(s): Web accessible database, Downloadable database, Software resource, Data storage repository
Resource: Resource
URL: http://www.aniseed.cnrs.fr/
*Id: nif-0000-10155
PMID: PMID 20647237
Keywords: embryology, embryonic, embyo, function, gene, genome, anatomy, annotation, ascidian, assay, cell, ciona intestinalis, ciona savignyi, cis-regulatory, database, development, halocynthia roretzi, model, molecular, morphogenesis, morphology, organism, phallusia mammillata, protein, molecular neuroanatomy resource
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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Notes

This page uses this default form:Resource

Old url: http://crfb.univ-mrs.fr/aniseed/index.php



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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:Ascidian Network for InSitu Expression and Embryological DataRDF feed
AbbrevANISEED  +
CurationStatuscurated  +
DefiningCitationhttp://www.aniseed.cnrs.fr/  +
Definition

Aniseed is a database designed to
Aniseed is a database designed to offer a representation of ascidian embryonic development at the level of the genome (cis-regulatory sequences, gene expression, protein annotation), of the cell (morphology, fate, induction, lineage) or of the whole embryo (anatomy, morphogenesis). Currently, four organism models are described in Aniseed: Ciona intestinalis, Ciona savignyi, Halocynthia roretzi and Phallusia mammillata.

This version supports four sets of Ciona intestinalis transcript models: JGI v1.0, KyotoGrail 2005, KH and ENSEMBL, all functionally annotated, and grouped into Aniseedv3.0 gene models. You can explore their expression profiles during normal or manipulated development, access validated cis-regulatory regions, get the molecular tools used to assay gene function, or all articles related to the function, or regulation of a given gene. Known transcriptional regulators and targets are listed for each gene, as are the gene regulatory networks acting in individual anatomical territories.

ANISEED is a community tool, and the direct involvement of external contributors is important to optimise the quality of the submitted data.

Virtual embryo: The 3D Virtual embryo is available to download in the download section of the website. ad in the download section of the website.
ExampleImageANISEED.PNG  +
GrantCategory:QLK3-CT-2001-01890   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleWeb accessible database  +, Downloadable database  +, Software resource  +, and Data storage repository  +
Idnif-0000-10155  +
Is part ofCentre National de la Recherche Scientifique  +
KeywordsEmbryology  +, Embryonic  +, Embyo  +, Function  +, Gene  +, Genome  +, Anatomy  +, Annotation  +, Ascidian  +, Assay  +, Cell  +, Ciona intestinalis  +, Ciona savignyi  +, Cis-regulatory  +, Database  +, Development  +, Halocynthia roretzi  +, Model  +, Molecular  +, Morphogenesis  +, Morphology  +, Organism  +, Phallusia mammillata  +, Protein  +, and Molecular neuroanatomy resource  +
LabelResource:Ascidian Network for InSitu Expression and Embryological Data  +
ModifiedDate18 October 2011  +
PMID20647237  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
Supporting AgencyCNRS  +, French Ministry of Research  +, Marseille-Nice Genopôle  +, ARC  +, European Network  +, EAC  +, Association pour la Recherche sur le Cancer  +, and Science and Technology Foundation of Portugal  +
SynonymAniseed database  +