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Resource:Ascidian Network for InSitu Expression and Embryological Data

Name: Resource:Ascidian Network for InSitu Expression and Embryological Data
Description:

Aniseed is a database designed to offer a representation of ascidian embryonic development at the level of the genome (cis-regulatory sequences, gene expression, protein annotation), of the cell (morphology, fate, induction, lineage) or of the whole embryo (anatomy, morphogenesis). Currently, four organism models are described in Aniseed: Ciona intestinalis, Ciona savignyi, Halocynthia roretzi and Phallusia mammillata.

This version supports four sets of Ciona intestinalis transcript models: JGI v1.0, KyotoGrail 2005, KH and ENSEMBL, all functionally annotated, and grouped into Aniseedv3.0 gene models. You can explore their expression profiles during normal or manipulated development, access validated cis-regulatory regions, get the molecular tools used to assay gene function, or all articles related to the function, or regulation of a given gene. Known transcriptional regulators and targets are listed for each gene, as are the gene regulatory networks acting in individual anatomical territories.

ANISEED is a community tool, and the direct involvement of external contributors is important to optimise the quality of the submitted data.

Virtual embryo: The 3D Virtual embryo is available to download in the download section of the website.
Other Name(s): Aniseed database
Parent Organization: Centre National de la Recherche Scientifique
Supporting Agency: CNRS, French Ministry of Research, Marseille-Nice Genopôle, ARC, European Network, EAC, Association pour la Recherche sur le Cancer, Science and Technology Foundation of Portugal
Resource Type(s): Web accessible database, Downloadable database, Software resource, Data storage repository
Keywords: embryology, embryonic, embyo, function, gene, genome, anatomy, annotation, ascidian, assay, cell, ciona intestinalis, ciona savignyi, cis-regulatory, database, development, halocynthia roretzi, model, molecular, morphogenesis, morphology, organism, phallusia mammillata, protein, molecular neuroanatomy resource
Grant: QLK3-CT-2001-01890
Abbreviation: ANISEED
Resource: Resource
URL: http://www.aniseed.cnrs.fr/
PMID: PMID 20647237
Id: nif-0000-10155
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Notes

This page uses this default form:Resource

Old url: http://crfb.univ-mrs.fr/aniseed/index.php



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Facts about Resource:Ascidian Network for InSitu Expression and Embryological DataRDF feed
AbbrevANISEED  +
CurationStatuscurated  +
DefiningCitationhttp://www.aniseed.cnrs.fr/  +
Definition

Aniseed is a database designed to
Aniseed is a database designed to offer a representation of ascidian embryonic development at the level of the genome (cis-regulatory sequences, gene expression, protein annotation), of the cell (morphology, fate, induction, lineage) or of the whole embryo (anatomy, morphogenesis). Currently, four organism models are described in Aniseed: Ciona intestinalis, Ciona savignyi, Halocynthia roretzi and Phallusia mammillata.

This version supports four sets of Ciona intestinalis transcript models: JGI v1.0, KyotoGrail 2005, KH and ENSEMBL, all functionally annotated, and grouped into Aniseedv3.0 gene models. You can explore their expression profiles during normal or manipulated development, access validated cis-regulatory regions, get the molecular tools used to assay gene function, or all articles related to the function, or regulation of a given gene. Known transcriptional regulators and targets are listed for each gene, as are the gene regulatory networks acting in individual anatomical territories.

ANISEED is a community tool, and the direct involvement of external contributors is important to optimise the quality of the submitted data.

Virtual embryo: The 3D Virtual embryo is available to download in the download section of the website. ad in the download section of the website.
ExampleImageANISEED.PNG  +
GrantCategory:QLK3-CT-2001-01890   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleWeb accessible database  +, Downloadable database  +, Software resource  +, and Data storage repository  +
Idnif-0000-10155  +
Is part ofCentre National de la Recherche Scientifique  +
KeywordsEmbryology  +, Embryonic  +, Embyo  +, Function  +, Gene  +, Genome  +, Anatomy  +, Annotation  +, Ascidian  +, Assay  +, Cell  +, Ciona intestinalis  +, Ciona savignyi  +, Cis-regulatory  +, Database  +, Development  +, Halocynthia roretzi  +, Model  +, Molecular  +, Morphogenesis  +, Morphology  +, Organism  +, Phallusia mammillata  +, Protein  +, and Molecular neuroanatomy resource  +
LabelResource:Ascidian Network for InSitu Expression and Embryological Data  +
ModifiedDate18 October 2011  +
PMID20647237  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
Supporting AgencyCNRS  +, French Ministry of Research  +, Marseille-Nice Genopôle  +, ARC  +, European Network  +, EAC  +, Association pour la Recherche sur le Cancer  +, and Science and Technology Foundation of Portugal  +
SynonymAniseed database  +