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Resource:BOMP: beta-barrel Outer Membrane protein Predictor

Name: Resource:BOMP: beta-barrel Outer Membrane protein Predictor
Description: [[Definition::BOMP is a tool for prediction of beta-barrel integral outer membrane proteins. The user may submit a list of proteins, and receive a list of predicted BOMPs.

The program, called the beta-barrel Outer Membrane protein Predictor (BOMP), is based on two separate components to recognize integral beta-barrel proteins. The first component is a C-terminal pattern typical of many integral beta-barrel proteins. The second component calculates an integral beta-barrel score of the sequence based on the extent to which the sequence contains stretches of amino acids typical of transmembrane -strands. To use the BOMP tool simply paste your fasta-formatted sequences into the text area, or choose a file which contains sequences. Then hit the submit button. It is possible to perform a BLAST search parallel with the predictions, which may be suitable in some cases. Using the BLAST search will however increase the running time substantially. Sponsors: This work was supported in part by grants from the Norwegian Research Council [SUP 140785/420 (GABI); FUGE/CBU151899/ISO], and the Meltzer Foundation, University of Bergen.

Keywords: Beta-barrel, Membrane, Protein, Program, Software, Beta strand, Bacteria,]]
Other Name(s): BOMP Program
Parent Organization: University of Bergen; Bergen; Norway
Resource Type(s): software application (birnlex_11012)
Resource: Resource
URL: http://www.bioinfo.no/tools/bomp
*Id: nif-0000-30236
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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Facts about Resource:BOMP: beta-barrel Outer Membrane protein PredictorRDF feed
CurationStatusCurated  +
DefiningCitationhttp://www.bioinfo.no/tools/bomp  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleSoftware application (birnlex 11012)  +
Idnif-0000-30236  +
Is part ofUniversity of Bergen; Bergen; Norway  +
LabelResource:BOMP: beta-barrel Outer Membrane protein Predictor  +
ModifiedDate18 May 2011  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
SynonymBOMP Program  +