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Resource:BOMP: beta-barrel Outer Membrane protein Predictor
| Name: | Resource:BOMP: beta-barrel Outer Membrane protein Predictor |
| Description: | [[Definition::BOMP is a tool for prediction of beta-barrel integral outer membrane proteins. The user may submit a list of proteins, and receive a list of predicted BOMPs.
The program, called the beta-barrel Outer Membrane protein Predictor (BOMP), is based on two separate components to recognize integral beta-barrel proteins. The first component is a C-terminal pattern typical of many integral beta-barrel proteins. The second component calculates an integral beta-barrel score of the sequence based on the extent to which the sequence contains stretches of amino acids typical of transmembrane -strands. To use the BOMP tool simply paste your fasta-formatted sequences into the text area, or choose a file which contains sequences. Then hit the submit button. It is possible to perform a BLAST search parallel with the predictions, which may be suitable in some cases. Using the BLAST search will however increase the running time substantially. Sponsors: This work was supported in part by grants from the Norwegian Research Council [SUP 140785/420 (GABI); FUGE/CBU151899/ISO], and the Meltzer Foundation, University of Bergen. Keywords: Beta-barrel, Membrane, Protein, Program, Software, Beta strand, Bacteria,]] |
| Other Name(s): | BOMP Program |
| Parent Organization: | University of Bergen; Bergen; Norway |
| Resource Type(s): | software application (birnlex_11012) |
| Resource: | Resource |
| URL: | http://www.bioinfo.no/tools/bomp |
| Id: | nif-0000-30236 |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Curation status: Uncurated
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This page uses this default form:Resource
| CurationStatus | Curated + |
| DefiningCitation | http://www.bioinfo.no/tools/bomp + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Software application (birnlex 11012) + |
| Id | nif-0000-30236 + |
| Is part of | University of Bergen; Bergen; Norway + |
| Label | Resource:BOMP: beta-barrel Outer Membrane protein Predictor + |
| ModifiedDate | 18 May 2011 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| SuperCategory | Resource + |
| Synonym | BOMP Program + |