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Resource:Cytoscape
| Name: | Resource:Cytoscape |
| Description: | Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Additional features are available as plugins. Cytoscape core distribution provides a basic set of features for data integration and visualization. Additional features are available as plugins. Plugins are available for network and molecular profiling analyses, new layouts, additional file format support, scripting, and connection with databases. Plugins may be developed by anyone using the Cytoscape open API based on Java technology and plugin community development is encouraged. Most of the plugins are freely available. Search for plugin's, scroll through the list or submit your plugin. Cytoscape works as a web service client. This means Cytoscape can directly connect to the external public databases and imports network and annotation data. Currently, Pathway Commons, IntAct, BioMart, NCBI Entrez Gene, and PICR are supported. And we continue to develop new service clients for popular databases. |
| Other Name(s): | Cytoscape: An Open Source Platform for Complex Network Analysis Visualization |
| Parent Organization: | Institute for Systems Biology; Washington; USA, University of California at San Diego; California; USA |
| Supporting Agency: | National Center for Research Resources, Resource:National Resource for Network Biology, National Institute of General Medical Sciences |
| Resource Type(s): | Software resource, Software repository |
| Keywords: | biological network visualization, systems biology |
| Grant: | RR031228, GM070743 |
| Abbreviation: | Cytoscape |
| Resource: | Resource |
| URL: | http://cytoscape.org |
| PMID: | PMID 21149340, 14597658 |
| Id: | nif-0000-30404 |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Categories related to Resource:Cytoscape
Resource:BiNGO: A Biological Networks Gene Ontology tool, Resource:BioGRID, Resource:ClueGO, Resource:DisGeNET, Resource:GeneMANIA, Resource:MiMI Plugin for Cytoscape, Resource:PiNGO, Resource:RamiGO
Curation status: Curated
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Notes
This page uses this default form:Resource
| Abbrev | Cytoscape + |
| CurationStatus | curated + |
| DefiningCitation | http://cytoscape.org + |
| Definition | Cytoscape is an open source bioinf … Cytoscape core distribution provides a basic set of features for data integration and visualization. Additional features are available as plugins. Plugins are available for network and molecular profiling analyses, new layouts, additional file format support, scripting, and connection with databases. Plugins may be developed by anyone using the Cytoscape open API based on Java technology and plugin community development is encouraged. Most of the plugins are freely available. Search for plugin's, scroll through the list or submit your plugin. Cytoscape works as a web service client. This means Cytoscape can directly connect to the external public databases and imports network and annotation data. Currently, Pathway Commons, IntAct, BioMart, NCBI Entrez Gene, and PICR are supported. And we continue to develop new service clients for popular databases. new service clients for popular databases. |
| Grant | Category:RR031228 +, and Category:GM070743 + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Software resource +, and Software repository + |
| Id | nif-0000-30404 + |
| Is part of | Institute for Systems Biology; Washington; USA +, and University of California at San Diego; California; USA + |
| Keywords | Biological network visualization +, and Systems biology + |
| Label | Resource:Cytoscape + |
| ModifiedDate | 12 January 2012 + |
| PMID | 21149340, 14597658 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| SuperCategory | Resource + |
| Supporting Agency | National Center for Research Resources +, Resource:National Resource for Network Biology +, and National Institute of General Medical Sciences + |
| Synonym | Cytoscape: An Open Source Platform for Complex Network Analysis Visualization + |