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Resource:Dendritica: Software Tools for Studying Dendritic Signaling

Name: Resource:Dendritica: Software Tools for Studying Dendritic Signaling
Description:

Dendritica is a program package for relating dendritic geometry and signal propagation. The programs are based on those used for the simulations described in the following paper: Vetter, P., Roth, A. & Husser, M. (2001). Action potential propagation in dendrites depends on dendritic morphology. Journal of Neurophysiology, 85: 926-937.
Dendritica can functionally be divided into three main parts:
- Interactive morphological analysis and electrophysiological simulation of single cells
- Automated batch simulations across a set of morphologies using the same simulation parameters
- Automated analysis of batch simulation runs
Dendritica requires NEURON 4.1.1 with some modifications described in Appendix 1. It was tested for NEURON 4.1.1 on Linux and SGI IRIX. Some modifications to the Dendritica code may be necessary in order to run it on older or newer versions of NEURON.

Sponsors: This work was supported by the Wellcome Trust, the European Community, the Max-Planck-Gesellschaft, the Wellcome Trust 4-year PhD Programme in Neuroscience.
Other Name(s): Dendritica
Resource Type(s): simulation software, software
Keywords: electrophysiological simulation, dendritic geometry, interactive, morphological, morphology, neuron, sigle cell, signal propagation
Resource: Resource
URL: http://www.dendrite.org/software.html
Id: nif-0000-10431
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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Facts about Resource:Dendritica: Software Tools for Studying Dendritic SignalingRDF feed
CurationStatuscurated  +
DefiningCitationhttp://www.dendrite.org/software.html  +
Definition

Dendritica is a program package fo
Dendritica is a program package for relating dendritic geometry and signal propagation. The programs are based on those used for the simulations described in the following paper: Vetter, P., Roth, A. & Husser, M. (2001). Action potential propagation in dendrites depends on dendritic morphology. Journal of Neurophysiology, 85: 926-937.
Dendritica can functionally be divided into three main parts:
- Interactive morphological analysis and electrophysiological simulation of single cells
- Automated batch simulations across a set of morphologies using the same simulation parameters
- Automated analysis of batch simulation runs
Dendritica requires NEURON 4.1.1 with some modifications described in Appendix 1. It was tested for NEURON 4.1.1 on Linux and SGI IRIX. Some modifications to the Dendritica code may be necessary in order to run it on older or newer versions of NEURON.

Sponsors: This work was supported by the Wellcome Trust, the European Community, the Max-Planck-Gesellschaft, the Wellcome Trust 4-year PhD Programme in Neuroscience.
-year PhD Programme in Neuroscience.
Has default formThis property is a special property in this wiki.Resource  +
Has roleSimulation software  +, and Software  +
Idnif-0000-10431  +
KeywordsElectrophysiological simulation  +, Dendritic geometry  +, Interactive  +, Morphological  +, Morphology  +, Neuron  +, Sigle cell  +, and Signal propagation  +
LabelResource:Dendritica: Software Tools for Studying Dendritic Signaling  +
ModifiedDate18 May 2011  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
SynonymDendritica  +