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Resource:EDAS - EST-Derived Alternative Splicing Database

Name: Resource:EDAS - EST-Derived Alternative Splicing Database
Description: Databases of alternatively spliced genes with data on the alignment of proteins, mRNAs, and EST. It contains information on all exons and introns observed, as well as elementary alternatives formed from them. The database makes it possible to filter the output data by changing the cut-off threshold by the significance level. It contains splicing information on human, mouse, dog (not yet functional) and rat (not yet functional). For each database, users can search by keyword or by overall gene expression. They can also view genes based on chromosomal arrangement or other position in genome (exon, intron, acceptor site, donor site), functionality, position, conservation, and EST coverage. Also offered is an online Fisher test.
[1]
Other Name(s): EST Derived Alternative Splicing Database, EDAS: EST Derived Alternative Splicing Database
Abbreviation: EDAS
Parent Organization: Moscow State University; Moscow; Russia
Resource Type(s): Database
Resource: Resource
URL: http://edas2.bioinf.fbb.msu.ru/
*Id: nif-0000-02786
Alternate Id(s): OMICS_01885
PMID: PMID 16909834
Listed By: Resource:OMICtools
Address: Department of Bioengineering and Bioinformatics, Moscow State Universit
Keywords: Alternative splicing, Gene, Protein, MRNA, EST, Exon, Intron, Rat, Dog
Organism: Human, Mouse
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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References

  1. Nurtdinov RN et al. (2006) [EDAS, databases of alternatively spliced human genes]. Biofizika 51: 589-92 PubMed


Notes

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Facts about Resource:EDAS - EST-Derived Alternative Splicing DatabaseRDF feed
AbbrevEDAS  +
AddressDepartment of Bioengineering and Bioinformatics  +, and Moscow State Universit  +
CurationStatuscurated  +
DefiningCitationhttp://edas2.bioinf.fbb.msu.ru/  +
DefinitionDatabases of alternatively spliced genes w Databases of alternatively spliced genes with data on the alignment of proteins, mRNAs, and EST. It contains information on all exons and introns observed, as well as elementary alternatives formed from them. The database makes it possible to filter the output data by changing the cut-off threshold by the significance level. It contains splicing information on human, mouse, dog (not yet functional) and rat (not yet functional). For each database, users can search by keyword or by overall gene expression. They can also view genes based on chromosomal arrangement or other position in genome (exon, intron, acceptor site, donor site), functionality, position, conservation, and EST coverage. Also offered is an online Fisher test.
so offered is an online Fisher test.
ExampleImageEDAS.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnif-0000-02786  +
Is part ofMoscow State University; Moscow; Russia  +
KeywordsAlternative splicing  +, Gene  +, Protein  +, MRNA  +, EST  +, Exon  +, Intron  +, Rat  +, and Dog  +
LabelResource:EDAS - EST-Derived Alternative Splicing Database  +
ListedbyResource:OMICtools  +
ModifiedDate11 December 2014  +
PMID16909834  +
Page has default formThis property is a special property in this wiki.Resource  +
SpeciesHuman  +, and Mouse  +
SuperCategoryResource  +
SynonymEST Derived Alternative Splicing Database  +, and EDAS: EST Derived Alternative Splicing Database  +
XrefOMICS_01885  +