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Revision as of 10:20, 28 July 2011 by Aarnaud (Talk | contribs)
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Resource:NEXTDB

Name: Resource:NEXTDB
Description: The Kohara lab has been constructing an expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans through EST analysis and systematic whole mount in situ hybridization. NEXTDB is the database to integrate all information from our expression pattern project and to make the data available to the scientific community.

Information available in the current version is as follows:

  • Map: Visual expression of the relationships among the cosmids, predicted genes and the cDNA clones.
  • Image: In situ hybridization images that are arranged by their developmental stages.
  • Sequence: Tag sequences of the cDNA clones are available.
  • Homology: Results of BLASTX search are available.

Users of the data presented on our web pages should not publish the information without our permission and appropriate acknowledgment.

Methods are available for:

  • In situ hybridization on whole mount embryos of C.elegans
  • Protocols for large scale in situ hybridization on C.elegans larvae
Other Name(s): Nematode Expression Pattern DataBase
Parent Organization: National Institute of Genetics; Shizuoka; Japan
Supporting Agency: CREST (Core Research for Evolutional Science and Technology) of JST (Japan Science and Technology Corporation), Ministry of Education Culture Sports Science and Technology (MEXT) of Japan
Resource Type(s): Database, Image, Experimental protocol, Expression atlas
Keywords: RNAi phenotypes, homology, BLAST, FASTA, chromosome map, cosmid, gene, clone
Abbreviation: NextDB
Resource: Resource
URL: http://nematode.lab.nig.ac.jp/
Id: nlx_46406
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Retrieved from "http://neurolex.org/wiki/Category:Resource:NEXTDB"
Facts about Resource:NEXTDBRDF feed
AbbrevNextDB  +
CurationStatusuncurated  +
DefiningCitationhttp://nematode.lab.nig.ac.jp/  +
DefinitionThe Kohara lab has been constructing an ex … The Kohara lab has been constructing an expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans through EST analysis and systematic whole mount in situ hybridization. NEXTDB is the database to integrate all information from our expression pattern project and to make the data available to the scientific community.

Information available in the current version is as follows:

  • Map: Visual expression of the relationships among the cosmids, predicted genes and the cDNA clones.
  • Image: In situ hybridization images that are arranged by their developmental stages.
  • Sequence: Tag sequences of the cDNA clones are available.
  • Homology: Results of BLASTX search are available.

Users of the data presented on our web pages should not publish the information without our permission and appropriate acknowledgment.

Methods are available for:

  • In situ hybridization on whole mount embryos of C.elegans
  • Protocols for large scale in situ hybridization on C.elegans larvae in situ hybridization on C.elegans larvae
ExampleImageNEXTDB.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +, Image  +, Experimental protocol  +, and Expression atlas  +
Idnlx_46406  +
Is part ofNational Institute of Genetics; Shizuoka; Japan  +
KeywordsRNAi phenotypes  +, Homology  +, BLAST  +, FASTA  +, Chromosome map  +, Cosmid  +, Gene  +, and Clone  +
LabelResource:NEXTDB  +
ModifiedDate29 July 2011  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
Supporting AgencyCREST (Core Research for Evolutional Science and Technology) of JST (Japan Science and Technology Corporation)  +, and Ministry of Education Culture Sports Science and Technology (MEXT) of Japan  +
SynonymNematode Expression Pattern DataBase  +