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Beyond the pdf

Name: Beyond the pdf
Description: A conference and discussion forum, the brainchild of PLoS editor Philp Bourne, to take the next steps toward the future of publishing. The tools demonstrated a the meeting are listed here.
Synonym(s): beyondthepdf
Is part of: University of California at San Diego; California; USA
Related to: Resource:FORCE11
Abbreviation: Beyond the PDF
Super-category: Conference
URL: https://sites.google.com/site/beyondthepdf/
Id: nlx_48628
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Beyond the pdf

Resource:A modular structure for scientific articles in an electronic environment, Resource:A.nnotate, Resource:ABCDE Format: Publishing Semantic Conference Papers, Resource:AcroMine, Resource:Acromine Disambiguator, Resource:AlzSWAN Knowledge Base, Resource:Annotation Ontology, Resource:Annotea, Resource:Annozilla (Annotea on Mozilla), Resource:Argumentative Zoning: Information Extraction from Scientific Articles, Resource:Bioscholar, Resource:Cell Launches Improved Article of the Future Across All Review Articles, Resource:Chemistry Add-in for Word, Resource:Chemistry Using Text Annotations, Resource:CiTO - the Citation Typing Ontology, Resource:Code4Lib Journal, Resource:Code4Lib Journal WordPress Customizations, Resource:Cohere, Resource:Commentpress, Resource:Comparison of web annotation systems, Resource:Concept Web Alliance, Resource:Conceptweblog, Resource:Daniel Mietchens demo wiki: What would scholarly communication look like if it were invented today?, Resource:Data Citation Awareness, Resource:DataWrangler, Resource:Dataverse Network Project, Resource:DermAtlas., Resource:Digress.it, Resource:ErmineJ, Resource:FACTA+., Resource:Fascinator, Resource:FigShare, Resource:GENIA Project: Mining literature for knowledge in molecular biology, Resource:GREC Corpus, Resource:Google Sidewiki, Resource:HyBrow (Hypothesis Browser), Resource:ISA Infrastructure for Managing Experimental Metadata, Resource:Integrated Content Environment, Resource:Internet Archive, Resource:KLEIO, Resource:Knowledge Blog, Resource:Knowledge Engineering from Experimental Design, Resource:Liquid Publications: Scientific Publications meet the Web, Resource:MEDIE, Resource:Madagascar, Resource:Marginalia Web Annotation, Resource:NIH Image, Resource:NIH Topic Maps - A Topic Database of NIH Funded Grants, Resource:NPG publishing format, Resource:National Centre for Text Mining … further results


Detail

Synonym Has role Is part of DefiningCitation
Resource:A modular structure for scientific articles in an electronic environment Modular Physics Paper Thesis University of Amsterdam; Amsterdam; Netherlands http://www.science.uva.nl/projects/commphys/papers/thesisfh/Front.html
Resource:ABCDE Format: Publishing Semantic Conference Papers The ABCDE Format: Publishing Semantic Conference Papers Standard specification Utrecht University; Utrecht; Netherlands http://www.w3.org/wiki/images/5/51/HCLSIG$$SWANSIOC$$Actions$$RhetoricalStructure$$models$$abcde$abcde_example.htm
Resource:AcroMine Service resource
Web service
University of Manchester; Manchester; United Kingdom http://www.nactem.ac.uk/software/acromine/
Resource:Acromine Disambiguator Service resource
Web service
University of Manchester; Manchester; United Kingdom http://www.nactem.ac.uk/software/acromine_disambiguation/
Resource:AlzSWAN Knowledge Base Database
Knowledge environment resource
Community building portal
Resource:Alzheimer Research Forum http://hypothesis.alzforum.org/
Resource:Annotation Ontology annotation-ontology
AO - Annotation Ontology
Ontology Harvard Medical School; Massachusetts; USA http://code.google.com/p/annotation-ontology/
Resource:Annotea Software resource W3C http://www.w3.org/2001/Annotea/
Resource:Annozilla (Annotea on Mozilla) Data set Mozdev.org http://annozilla.mozdev.org/
Resource:Argumentative Zoning: Information Extraction from Scientific Articles Thesis University of Cambridge; Cambridge; United Kingdom http://www.cl.cam.ac.uk/~sht25/az.html
Resource:Bioscholar Software application
Source code
University of Southern California; California; USA http://www.isi.edu/projects/bioscholar/overview
Resource:Cell Launches Improved Article of the Future Across All Review Articles Narrative resource Cell Press http://beta.cell.com/
Resource:Chemistry Add-in for Word Chemistry Add-in Software resource Microsoft Research
University of Cambridge; Cambridge; United Kingdom
http://research.microsoft.com/en-us/projects/chem4word/
Resource:Chemistry Using Text Annotations Software resource
Service resource
University of Manchester; Manchester; United Kingdom http://www.nactem.ac.uk/cheta/
Resource:CiTO - the Citation Typing Ontology Citation Typing Ontology
CiTO the Citation Typing Ontology
Ontology University of Oxford; Oxford; United Kingdom http://imageweb.zoo.ox.ac.uk/pub/2009/citobase/cito-20100528-1.6/cito-content/owldoc/
Resource:Code4Lib Journal Narrative resource http://journal.code4lib.org/
Resource:Code4Lib Journal WordPress Customizations Software resource
Authoring tool
Code4Lib http://wiki.code4lib.org/index.php/Code4Lib_Journal_WordPress_Customizations
Resource:Cohere Service resource
Annotation tool
Authoring tool
Open University; Milton Keynes; United Kingdom http://cohere.open.ac.uk/
Resource:Commentpress Software resource Institute for the Future of the Book http://www.futureofthebook.org/commentpress/
Resource:Comparison of web annotation systems Wiki Resource:Wikipedia http://en.wikipedia.org/wiki/Web_annotation#Comparison_of_web_annotation_systems
Resource:Concept Web Alliance Knowledge environment resource Netherlands Bioinformatics Centre http://www.nbic.nl/about-nbic/affiliated-organisations/cwa/introduction/
Resource:Conceptweblog Blog Resource:Concept Web Alliance http://conceptweblog.wordpress.com/
Resource:Daniel Mietchens demo wiki: What would scholarly communication look like if it were invented today? Wiki Open Access Scholarly Publishers Association http://www.science3point0.com/coaspedia/index.php/Welcome
Resource:Data Citation Awareness Narrative resource Resource:Australian National Data Service http://ands.org.au/guides/data-citation-awareness.html
Resource:DataWrangler Service resource Stanford University; California; USA http://vis.stanford.edu/wrangler/
Resource:Dataverse Network Project Dataverse Network
Dataverse Network Project: An Open-Source Application for Publishing Citing and Discovering Research Data
Dataverse Network Project: An Open-Source Application for Publishing Citing Discovering Research Data
Software application
Storage service resource
Data or information resource
Harvard University; Massachusetts; USA http://thedata.org/home
Resource:DermAtlas. Dermatology Image Atlas Database
Image
Data repository
Johns Hopkins University School of Medicine; Maryland; USA http://dermatlas.med.jhmi.edu/derm/
Resource:Digress.it Software resource
Source code
University of Lincoln; Lincoln; United Kingdom http://digress.it/
Resource:ErmineJ ermineJ: Gene Ontology analysis for high-throughput data Data analysis software University of British Columbia; British Columbia; Canada
Columbia University; New York; USA
http://bioinformatics.ubc.ca/ermineJ/
Resource:FACTA+. Finding Associated Concepts with Text Analysis Service resource
Web service
Resource:National Centre for Text Mining http://www.nactem.ac.uk/facta/
Resource:Fascinator The Fascinator Software resource
Source code
University of Southern Queensland; Queensland; Australia http://fascinator.usq.edu.au/
Resource:FigShare Data repository http://figshare.com/
Resource:GENIA Project: Mining literature for knowledge in molecular biology Software resource
Data or information resource
Resource:National Centre for Text Mining
University of Tokyo; Tokyo; Japan
http://www.nactem.ac.uk/genia/
Resource:GREC Corpus Gene Event Regulation Corpus Training set
Data or information resource
Resource:National Centre for Text Mining http://www.nactem.ac.uk/GREC/
Resource:Google Sidewiki Software resource Google http://www.google.com/sidewiki/intl/en/index.html
Resource:HyBrow (Hypothesis Browser) Hypothesis Browser
HyBrow: A prototype system for computer-aided hypothesis evaluation
Software resource Stanford University; California; USA http://www.hybrow.org/
Resource:ISA Infrastructure for Managing Experimental Metadata ISA infrastructure
isainfrastructure
Investigation / Study / Assay (ISA) infrastructure
Investigation/Study/Assay (ISA) infrastructure
Investigation/Study/Assay infrastructure
Investigation / Study / Assay infrastructure
ISA metadata tracking tools
Software resource
Standard specification
ISA Team including
University of Oxford; Oxford; United Kingdom
Resource:European Bioinformatics Institute
Harvard School of Public Health; Massachusetts; USA
http://isatab.sourceforge.net/index.html
Resource:Integrated Content Environment Integrated Content Environment (ICE) Software application University of Southern Queensland; Queensland; Australia http://www.usq.edu.au/lrds/tech/ice
Resource:Internet Archive The Internet Archive Organization portal
Narrative resource
Audio track
Software resource
Video resource
http://www.archive.org/
Resource:KLEIO Service resource Resource:National Centre for Text Mining http://www.nactem.ac.uk/Kleio/
Resource:Knowledge Blog Knowledge Blog - Scientific Publishing for the Web Generation Blog
Authoring tool
http://knowledgeblog.org/
Resource:Knowledge Engineering from Experimental Design Software application Resource:Biomedical Informatics Research Network https://wiki.birncommunity.org/display/NEWBIRNCC/Knowledge+Engineering+from+Experimental+Design+%28%27KEfED%27%29
Resource:Liquid Publications: Scientific Publications meet the Web Liquid Publications Topical portal University of Trento; Trento; Italy http://liquidpub.org/
Resource:MEDIE Data analysis service University of Tokyo; Tokyo; Japan
Resource:National Centre for Text Mining
http://www.nactem.ac.uk/medie/
Resource:Madagascar Data analysis software
Data processing software
Source code
http://www.reproducibility.org/wiki/Main_Page
Resource:Marginalia Web Annotation Software resource
Source code
Simon Fraser University; British Columbia; Canada http://webmarginalia.net/
Resource:NIH Image Image processing software
Image analysis software
Source code
National Institutes of Health http://rsb.info.nih.gov/nih-image/index.html
Resource:NIH Topic Maps - A Topic Database of NIH Funded Grants NIH Maps
NIH Map Viewer
Service resource
Database
Resource:Biomedical Informatics Research Network http://www.nihmaps.org/index.php
Resource:NPG publishing format NGP Publishing Framework
Next-Generation Paper digital format
Next-Generation Paper format
Publishing format Mayo Clinic; Minnesota; USA https://sites.google.com/site/beyondthepdf/workshop-papers/beyond-the-dead-sea-pdfs
Resource:National Centre for Text Mining National Center for Text Mining Organization portal
Service resource
Text-mining software
Software resource
University of Manchester; Manchester; United Kingdom http://www.nactem.ac.uk/
Resource:ODIN ORCID and DataCite Interoperability Network Service resource
Source code
British Library http://datacite.labs.orcid-eu.org
Resource:ORCID - Open Researcher and Contributor ID ORCID: Open Researcher and Contributor ID
Open Researcher and Contributor ID
ORCID - Open Researcher and Contributor ID
ORCID - Open Researcher Contributor ID
Open Reseacher & Contributor ID (ORCID)
ORCID - Open Reseacher & Contributor ID
International standard specification
Service resource
http://www.orcid.org/
Resource:Ontology for Biomedical Investigations OBI Ontology Ontology
Knowledge environment resource
http://obi-ontology.org/page/Main_Page
Resource:Open Access and the developing world Access service resource
Journal
BioMed Central - The Open Access Publisher http://www.biomedcentral.com/developingcountries/
Resource:Open Annotation Collaboration Topical portal
Knowledge environment resource
http://www.openannotation.org/
Resource:Open Provenance Model The OPM Provenance Model (OPM)
OPM Provenance Model
The OPM Provenance Model
Standard specification http://openprovenance.org/
Resource:Open Science Summit Meeting resource http://opensciencesummit.com/
Resource:Oscar3 Open Source Chemistry Analysis Routines Software resource University of Cambridge; Cambridge; United Kingdom http://www-pmr.ch.cam.ac.uk/wiki/Oscar3
Resource:PDB Protein Data Bank
RCSB Protein Data Bank
Database
Web service
Data repository
University of California at San Diego; California; USA
Rutgers University; New Jersey; USA
http://www.rcsb.org/pdb/
Resource:PLoS Blogs Public Library of Science Blogs
PLoS Blogs Network
Public Library of Science - Science Blog Network
Blog Resource:PLoS http://blogs.plos.org/
Resource:PaperMaker Paper Maker Data analysis service Resource:European Bioinformatics Institute http://www.ebi.ac.uk/Rebholz-srv/PaperMaker/
Resource:Personal Archiving Personal Digital Archiving
Personal Digital Archiving Conference
Personal Archiving Conference
Blog
Meeting resource
Internet Archive http://www.personalarchiving.com/
Resource:Pliny Software resource King's College London; England; United Kingdom http://pliny.cch.kcl.ac.uk/
Resource:RSC Prospect Royal Society of Chemistry Prospect
Project Prospect
Production service resource Royal Society of Chemistry http://www.rsc.org/Publishing/Journals/ProjectProspect/FAQ.asp
Resource:Rhetorical Document Structure Group HCLS IG W3C Wiki
Standard specification
Knowledge environment resource
HCLS IG W3C http://www.w3.org/wiki/HCLSIG/SWANSIOC/Actions/RhetoricalStructure
Resource:SciVee SciVee Make Your Research Known Topical portal
Community building portal
Video resource
University of California at San Diego; California; USA http://www.scivee.tv/
Resource:Semantic MediaWiki Semantic Media Wiki Software resource MediaWiki http://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki
Resource:SharedCopy Shared Copy Service resource http://sharedcopy.com/
Resource:Support-of-PDF-annotations How to express and exchange annotations Wiki
Software resource
Resource:GitHub https://github.com/nichtich/marginalia/wiki/Support-of-PDF-annotations
Resource:TerMine Analysis service resource
Web service
Software resource
University of Manchester; Manchester; United Kingdom http://www.nactem.ac.uk/software/termine/
Resource:U-Compare Service resource
Text-mining software
Workflow software
University of Tokyo; Tokyo; Japan
Resource:National Centre for Text Mining
University of Colorado Denver; Colorado; USA
http://u-compare.org/
Resource:Utopia Documents Utopia Docs Software application University of Manchester; Manchester; United Kingdom http://utopiadocs.com/documents/
Resource:VisTrails Vis Trails Workflow software
Software resource
University of Utah; Utah; USA http://www.vistrails.org/
Resource:W3C Provenance Incubator Group Wiki W3C Provenance Incubator Group
Provenance Incubator Group Wiki
Wiki
Standard specification
Knowledge environment resource
W3C
University of Southern California; California; USA
http://www.w3.org/2005/Incubator/prov/wiki/Main_Page
Resource:Webtracks Knowledge environment resource JISC http://www.jisc.ac.uk/whatwedo/programmes/mrd/clip/webtracks.aspx
Resource:WordPress Plugin Directory Software resource
Software repository
Resource:WordPress http://wordpress.org/extend/plugins/
Resource:Wordpress for Scientists Blogging Beyond the PDF - Plugins by Martin Fenner Authoring tool https://sites.google.com/site/wpscientists/home/plugins
Resource:WormBook The Online Review of C. Elegans Biology WormBook: The Online Review of C. Elegans Biology Book
Experimental protocol
Columbia University; New York; USA http://www.wormbook.org/
Resource:Zebrafish - SCORE Imaging: Specimen in a Corrected Optical Rotational Enclosure Specimen in a Corrected Optical Rotational Enclosure imaging Narrative resource University of Minnesota Twin Cities; Minnesota; USA
Mayo Clinic; Minnesota; USA
http://www.zfishbook.org/NGP/journalcontent/SCORE/SCORE.html
Resource:aTag Generator associative tags
associated tags
Software resource Resource:Digital Enterprise Research Institute http://hcls.deri.org/atag/generator/
Resource:alt-metrics: a manifesto altmetrics Narrative resource
Software resource
Video resource
http://altmetrics.org/manifesto/
Resource:brat rapid annotation tool brat rapid annotation tool - online environment for collaborative text annotation Service resource
Software resource
University of Manchester; Manchester; United Kingdom
Resource:National Centre for Text Mining
University of Tokyo; Tokyo; Japan
http://brat.nlplab.org/index.html
Resource:crowdLabs crowd Labs Storage service resource
Data analysis service
Community building portal
http://www.crowdlabs.org/
Resource:myExperiment my experiment Community building portal
Data repository
Service resource
Workflow software
Database
University of Southampton; Southampton; United Kingdom
University of Manchester; Manchester; United Kingdom
University of Oxford; Oxford; United Kingdom
http://www.myexperiment.org/


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Contributors

Aarnaud, Bandrow, Memartone



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Facts about Beyond the pdfRDF feed
AbbrevBeyond the PDF  +
CurationStatusuncurated  +
DefiningCitationhttps://sites.google.com/site/beyondthepdf/  +
DefinitionA conference and discussion forum, the brainchild of PLoS editor Philp Bourne, to take the next steps toward the future of publishing. The tools demonstrated a the meeting are listed here.
Idnlx_48628  +
Is part ofUniversity of California at San Diego; California; USA  +
LabelBeyond the pdf  +
ModifiedDate23 August 2012  +
RelatedToResource:FORCE11  +
SuperCategoryConference  +
Synonymbeyondthepdf  +