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Data analysis software

Name: Data analysis software
Description: A resource that provides an application or program that is used to gather, model, and transform data with the goal of highlighting useful information, suggesting conclusions, and supporting decision making.
Super-category: Data processing software
*Id: birnlex_2211
Link to OWL / RDF: Download this content as OWL/RDF

Categories with role Data analysis software

Resource:ADAPT, Resource:ADInstruments - Data Acquisition Systems for Life Science, Resource:AMIDE: Amides a Medical Imaging Data Examiner, Resource:Activ 2000, Resource:Affymetrix Power Tools, Resource:An Integrated Multiple Structure Visualization and Multiple Sequence Alignment Application, Resource:Analysis of Functional NeuroImages, Resource:Augustus: Gene Prediction, Resource:Autoaligner, Resource:Avadis, Resource:BAIT, Resource:BITOLA: Biomedical Discovery Support System, Resource:BMDExpress, Resource:Babel, Resource:Bacterial Genomes, Resource:Bayesian Analysis of Common NMR Problems, Resource:BiQ Analyzer: A Software Tool for DNA Methylation Analysis, Resource:Bio-Image Semantic Query User Environment Database, Resource:BioLayout Express 3D, Resource:BioRAT: A Search Engine and Information Extraction Tool for Biological Research, Resource:Bioconductor, Resource:Biodatomics, Resource:Biometric Research Branch: ArrayTools, Resource:Blind Source Separation and Independent Component Analysis, Resource:Brain Networks, Resource:Buzsaki Lab, Resource:CGEN, Resource:CGHbase, Resource:CMAP, Resource:COLELMS: Stata module to calculate Coles LMS values for growth data, Resource:COnsensus-DEgenerate Hybride Oligonucleotide Primers, Resource:CUAHSI Hydrologic Information System, Resource:CellProfiler Analyst, Resource:Centroid Trajectory Analysis, Resource:Cerebellar Platform, Resource:ChIP-seq, Resource:ChIPmeta, Resource:Chronux, Resource:Clair library, Resource:Classifier for Metagenomic Sequences, Resource:Computational Cancer Genomics Group, Resource:Connectome Workbench, Resource:Corner Cube Environment, Resource:Cortical Box Method: Quantitative analysis for gene expressions in rodent cortex, Resource:DIStributions of SPINEs, Resource:DeRisi Lab, Resource:Diffusing Tensor Imaging in Java, Resource:Divvy, Resource:DnaSP, Resource:EGAN: Exploratory Gene Association Networks, Resource:ENIGMA, Resource:ERPLAB, Resource:ESTScan, Resource:EasyqpcR, Resource:Elephant, Resource:ErmineJ, Resource:FMRIB Software Library, Resource:Fiber Tracking / DTI Checker, Resource:FieldTrip, Resource:FisWidgets, Resource:Foundational Model Explorer, Resource:FunCluster, Resource:Functional Connectivity Toolbox, Resource:GATK, Resource:GCG/SeqWeb, Resource:GENORM, Resource:GOArray, Resource:GOHyperGAll, Resource:GOdist, Resource:GPM, Resource:Galaxy, Resource:Gene Ontology For Functional Analysis (GOFFA), Resource:GeneAnswers, Resource:GeneChip Operating Software, Resource:GeneCluster 2: An Advanced Toolset for Bioarray Analysis, Resource:GeneMeta, Resource:GeneNetWorks, Resource:GenePattern, Resource:GeneTraffic, Resource:GeneWindow, Resource:GenoSet, Resource:Genomatix Software: Understanding Gene Regulation, Resource:Graphpad Prism, Resource:Group ICA Of EEG Toolbox, Resource:Happy, Resource:Hmmer, Resource:Human Epigenome Browser, Resource:InterProScan, Resource:InteroPorc, Resource:JointSNVMix, Resource:L2L Microarray Analysis Tool, Resource:LONI Software, Resource:LYSIS, Resource:Longhorn Array Database, Resource:Low Resolution Brain Electromagnetic Tomography, Resource:Lyngby, Resource:MAIA, Resource:MAPPFinder, Resource:MAUDS, Resource:MEME Suite - Motif-based sequence analysis tools, Resource:MITRE Neuroinformatics, Resource:MRIcro Software, Resource:Madagascar, Resource:MaryGold, Resource:MatOFF, Resource:Mean Machine, Resource:Microarray Literature-based Annotation, Resource:Microcal Origin, Resource:Mini Analysis Program, Resource:MinimumDistance, Resource:MitoRes, Resource:Mutascope, Resource:NIRS-SPM, Resource:NIS (NeuroImaging Statistics), Resource:Neals DNA Mutation Site, Resource:Neural Cipher, Resource:Neural Decoding Toolbox, Resource:Neural Systems and Graphics Computing Laboratory: Micro3D Software, Resource:NeuroExplorer, Resource:NeuroMatic, Resource:NeuroServ, Resource:Neurolucida, Resource:Neuronland: NLMorphologyConverter, Resource:Nitime, Resource:Nonparametric Prediction Activation Influence Reproducibility re-Sampling, Resource:Normative Independent Component Analysis, Resource:Omixon Target Data Analysis, Resource:OntoMorph Tab, Resource:PANTHER Evolutionary analysis of coding SNPs, Resource:PLINK, Resource:POPBAM, Resource:PV-Wave, Resource:Palamedes Toolbox, Resource:ParaView, Resource:PathCase: Metabolic Pathway Database System, Resource:Piano, Resource:Poldracklab Portal, Resource:PolyPhen: Polymorphism Phenotyping, Resource:PredSL, Resource:Prediction of Activity Spectra for Substances, Resource:Protein Databank Fun, Resource:Psort, Resource:QGene, Resource:RAxML, Resource:SAFA Footprinting Software, Resource:SCRalyze, Resource:SEER Datasets and Software, Resource:SINOMO (SIngular NOde MOtifs), Resource:SNPdat, Resource:SeqGSEA, Resource:SimToolDB, Resource:Simpleaffy, Resource:Software Distribution Sets, Resource:South African National Bioinformatics Institute: Resources, Resource:Spark, Resource:Spike Sorting Evaluation Project, Resource:Spike Train Analysis Software by Attila Szucs: Orbital Spike 4, Resource:SpliceSeq, Resource:StRAnGER, Resource:Stacks, Resource:Sub-Volume Thresholding Analysis, Resource:Summary of recordings of spike trains available for analysis and guide to their context and means for their analysis, Resource:THEA - Tools for High-throughput Experiments Analysis, Resource:The Hamner Institute for Health Sciences: BMDExpress and The multiple-path particle dosimetry, Resource:TrED, Resource:TransFIC, Resource:Transporter Classification Database, Resource:VARIANT, Resource:Visages Research Equipment Software, Resource:Weighted Gene Co-expression Network Analysis, Resource:Yandell Lab Portal, Resource:asSeq, Resource:bamova, Resource:caTRIP, Resource:categoryCompare, Resource:cn.FARMS, Resource:factDesign, Resource:genArise, Resource:genomics Workbench, Resource:go-moose, Resource:mach2qtl, Resource:metaSeq, Resource:metahdep, Resource:ngsTools, Resource:nsSNPAnalyzer, Resource:oneClickCGH, Resource:pickgene, Resource:r3Cseq have the role Data analysis software



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Resource:ADAPT Resource:Biomedical Simulations Resource http://bmsr.usc.edu/software/adapt/ ADAPT.PNG
Resource:ADInstruments - Data Acquisition Systems for Life Science http://www.adinstruments.com/products/software/modules/neuro_explorer.php ADInstruments.PNG
Resource:AMIDE: Amides a Medical Imaging Data Examiner Resource:SourceForge http://amide.sourceforge.net
Resource:Activ 2000 http://www.fmritools.org/Activ2000/activ2000.htm
Resource:Affymetrix Power Tools Resource:Affymetrix http://www.affymetrix.com/partners_programs/programs/developer/tools/powertools.affx
Resource:An Integrated Multiple Structure Visualization and Multiple Sequence Alignment Application Northeastern University; Massachusetts; USA http://ilyinlab.org/friend/
Resource:Analysis of Functional NeuroImages National Institute of Mental Health http://afni.nimh.nih.gov/afni/ AFNI.PNG
Resource:Augustus: Gene Prediction Georg-August-University of Göttingen; Lower Saxony; Germany http://augustus.gobics.de/
Resource:Autoaligner Andor Technology http://www.bitplane.com/go/products/autoaligner
Resource:Avadis Strand Scientific Intelligence http://www.avadis-ngs.com Avadis.PNG
Resource:BAIT Resource:SourceForge http://sourceforge.net/projects/bait/
Resource:BITOLA: Biomedical Discovery Support System University of Ljubljana; Ljubljana; Slovenia http://www.mf.uni-lj.si/bitola/
Resource:BMDExpress Resource:SourceForge http://sourceforge.net/projects/bmdexpress/ BMDExpress.png
Resource:Babel University of California at San Francisco; California; USA http://taylorlab.ucsf.edu/software_data.html
Resource:Bacterial Genomes Wellcome Trust Sanger Institute; Hinxton; United Kingdom http://www.sanger.ac.uk/Projects/Microbes/
Resource:Bayesian Analysis of Common NMR Problems Washington University in St. Louis; Missouri; USA http://bayesiananalysis.wustl.edu
Resource:BiQ Analyzer: A Software Tool for DNA Methylation Analysis Max-Planck-Institute for Informatics; Saarbrucken; Germany http://biq-analyzer.bioinf.mpi-sb.mpg.de
Resource:Bio-Image Semantic Query User Environment Database University of California at Santa Barbara; California; USA http://www.bioimage.ucsb.edu/downloads/Bisque Database
Resource:BioLayout Express 3D University of Edinburgh; Scotland; United Kingdom
EMBL - European Bioinformatics Institute; Cambridge; United Kingdom
http://www.biolayout.org
Resource:BioRAT: A Search Engine and Information Extraction Tool for Biological Research University College London; London; United Kingdom http://bioinf.cs.ucl.ac.uk/software_downloads/biorat/
Resource:Bioconductor Resource:Fred Hutchinson Cancer Research Center http://www.bioconductor.org/ Bioconductor.PNG
Resource:Biodatomics Biodynamics LLC http://www.biodatomics.com/
Resource:Biometric Research Branch: ArrayTools National Cancer Institute http://linus.nci.nih.gov./BRB-ArrayTools.html
Resource:Blind Source Separation and Independent Component Analysis TELECOM ParisTech; Paris; France http://perso.telecom-paristech.fr/~cardoso/guidesepsou.html BSS and ICA.PNG
Resource:Brain Networks Resource:SourceForge http://brainnetworks.sourceforge.net Brain Networks.PNG
Resource:Buzsaki Lab Rutgers University; New Jersey; USA http://www.buzsakilab.com/ Buzsaki Lab.PNG
Resource:CGEN Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/CGEN.html CGEN.PNG
Resource:CGHbase Resource:Bioconductor http://www.bioconductor.org/packages/2.14/bioc/html/CGHbase.html
Resource:CMAP Resource:Generic Model Organism Database Project http://gmod.org/wiki/Cmap
Resource:COLELMS: Stata module to calculate Coles LMS values for growth data Boston College; Massachusetts; USA http://ideas.repec.org/c/boc/bocode/s360702.html
Resource:COnsensus-DEgenerate Hybride Oligonucleotide Primers University of Washington; Washington; USA http://blocks.fhcrc.org/blocks/codehop.html
Resource:CUAHSI Hydrologic Information System CUAHSI http://his.cuahsi.org/ CUAHSI-HIS.PNG
Resource:CellProfiler Analyst Resource:Broad Institute http://cellprofiler.org CellProfiler Analyst.PNG
Resource:Centroid Trajectory Analysis Free University of Berlin; Berlin; Germany
Resource:SourceForge
http://buridan.sourceforge.net/
Resource:Cerebellar Platform Resource:INCF Japan Node
Resource:RIKEN Brain Science Institute
http://platform.cerebellum.neuroinf.jp/ CerebellarPlatform.jpg
Resource:ChIP-seq Resource:SourceForge
Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland
http://chip-seq.sourceforge.net/
Resource:ChIPmeta Resource:SourceForge http://sourceforge.net/projects/chipmeta/
Resource:Chronux Resource:Cold Spring Harbor Laboratory http://chronux.org Chronux.PNG
Resource:Clair library University of Michigan; Michigan; USA http://www.clairlib.org Clairlib.PNG
Resource:Classifier for Metagenomic Sequences Resource:DOE Joint Genome Institute http://clams.jgi-psf.org/
Resource:Computational Cancer Genomics Group Resource:Swiss Institute of Bioinformatics http://www.isrec.isb-sib.ch/
Resource:Connectome Workbench Resource:WU-Minn Consortium: Human Connectome Project http://humanconnectome.org/connectome/connectome-workbench.html Connectome Workbench.PNG
Resource:Corner Cube Environment University of Minnesota Twin Cities; Minnesota; USA http://www.idoimaging.com/program/218
Resource:Cortical Box Method: Quantitative analysis for gene expressions in rodent cortex National Institute for Basic Biology; Okazaki; Japan http://www.nibb.ac.jp/cortex/
Resource:DIStributions of SPINEs Polytechnic University of Madrid; Madrid; Spain http://cajalbbp.cesvima.upm.es/dispine DIStributions of SPINEs.PNG
Resource:DeRisi Lab University of California at San Francisco; California; USA http://derisilab.ucsf.edu/
Resource:Diffusing Tensor Imaging in Java Duke University; North Carolina; USA http://dblab.duhs.duke.edu/modules/DBLABS_JDTI2/index.php?id=1
Resource:Divvy University of California at San Diego; California; USA http://divvy.ucsd.edu/ Divvy.PNG
Resource:DnaSP University of Barcelona; Barcelona; Spain http://www.ub.es./dnasp DnaSP.PNG
Resource:EGAN: Exploratory Gene Association Networks Resource:UCSF Helen Diller Family Comprehensive Cancer Center Biostatistics Core http://akt.ucsf.edu/EGAN/ EGAN.PNG
Resource:ENIGMA Ghent University; Ghent; Belgium http://bioinformatics.psb.ugent.be/ENIGMA/
Resource:ERPLAB University of California at Davis; California; USA http://erpinfo.org/erplab
Resource:ESTScan Resource:SourceForge http://estscan.sourceforge.net/ ESTScan.PNG
Resource:EasyqpcR Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/EasyqpcR.html
Resource:Elephant Resource:NeuralEnsemble
Resource:GitHub
https://github.com/NeuralEnsemble/elephant
Resource:ErmineJ University of British Columbia; British Columbia; Canada
Columbia University; New York; USA
http://bioinformatics.ubc.ca/ermineJ/ ErmineJ.PNG
Resource:FMRIB Software Library University of Oxford; Oxford; United Kingdom http://www.fmrib.ox.ac.uk/fsl
Resource:Fiber Tracking / DTI Checker University of North Carolina at Chapel Hill; North Carolina; USA http://www.ia.unc.edu/dev/download/index.htm
Resource:FieldTrip Radboud University Nijmegen; Nijmegen; Netherlands http://fieldtrip.fcdonders.nl/ FieldTrip.PNG
Resource:FisWidgets University of Pittsburgh; Pennsylvania; USA http://sourceforge.net/projects/fiswidgets/
Resource:Foundational Model Explorer University of Washington; Washington; USA http://sig.biostr.washington.edu/projects/fm/FME/index.html
Resource:FunCluster Resource:Cordelier Research Center http://corneliu.henegar.info/FunCluster.htm FunCluster.PNG
Resource:Functional Connectivity Toolbox University of Pittsburgh; Pennsylvania; USA https://sites.google.com/site/functionalconnectivitytoolbox/ Functional Connectivity Toolbox.PNG
Resource:GATK Resource:Broad Institute http://www.broadinstitute.org/gatk/ GATK.PNG
Resource:GCG/SeqWeb University of Hawaii at Manoa; Hawaii; USA http://core.biotech.hawaii.edu/Bioinformatics.htm GCG SeqWeb.PNG
Resource:GENORM Ghent University; Ghent; Belgium http://medgen.ugent.be/~jvdesomp/genorm/ GeNorm.PNG
Resource:GOArray Yale School of Medicine; Connecticut; USA http://goarray.med.yale.edu/GOArray/ GOArray.PNG
Resource:GOHyperGAll University of California at Riverside; California; USA http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual#GOHyperGAll GOHyperGAll.PNG
Resource:GOdist Hebrew University of Jerusalem; Jerusalem; Israel http://basalganglia.huji.ac.il/links.htm GOdist.PNG
Resource:GPM http://www.thegpm.org/
Resource:Galaxy Pennsylvania State University; Pennsylvania; USA http://galaxyproject.org/ Galaxy.PNG
Resource:Gene Ontology For Functional Analysis (GOFFA) Resource:National Center for Toxicological Research http://www.fda.gov/ScienceResearch/BioinformaticsTools/Arraytrack/default.htm ArrayTrack.PNG
Resource:GeneAnswers Northwestern University; Illinois; USA http://bioconductor.org/packages/bioc/html/GeneAnswers.html
Resource:GeneChip Operating Software Resource:The Scripps Research Institute http://www.scripps.edu/researchservices/dna_array/pages/Data_Analysis_GCOS.htm GCOS.PNG
Resource:GeneCluster 2: An Advanced Toolset for Bioarray Analysis Resource:Broad Institute http://www.broad.mit.edu/cancer/software/genecluster2/gc2.html
Resource:GeneMeta Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/GeneMeta.html
Resource:GeneNetWorks http://wwwmgs.bionet.nsc.ru/mgs/gnw/about.shtml
Resource:GenePattern Resource:Broad Institute http://www.broadinstitute.org/cancer/software/genepattern GenePattern.PNG
Resource:GeneTraffic CDMC http://www.flyarrays.com/index.php?option=com_content&task=view&id=18&Itemid=35
Resource:GeneWindow National Cancer Institute http://genewindow.nci.nih.gov/
Resource:GenoSet Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/genoset.html
Resource:Genomatix Software: Understanding Gene Regulation Resource:Genomatix Solutions http://www.genomatix.de/
Resource:Graphpad Prism GraphPad Software Inc http://www.graphpad.com/ Graphpad Prism.PNG
Resource:Group ICA Of EEG Toolbox Resource:MIALAB - Medical Image Analysis Lab http://mialab.mrn.org/software/eegift/index.html EEGIFT.PNG
Resource:Happy Resource:Wellcome Trust Centre for Human Genetics http://www.well.ox.ac.uk/happy/ HAPPY.PNG
Resource:Hmmer Resource:HHMI Janelia Farm Research Campus http://hmmer.janelia.org/ Hmmer.PNG
Resource:Human Epigenome Browser Washington University School of Medicine in St. Louis; Missouri; USA
Resource:Roadmap Epigenomics Project
http://epigenomegateway.wustl.edu/ Human Epigenome Browser.PNG
Resource:InterProScan Resource:European Bioinformatics Institute http://www.ebi.ac.uk/Tools/pfa/iprscan/ InterProScan.PNG
Resource:InteroPorc Resource:CEA; Gif sur Yvette; France http://biodev.extra.cea.fr/interoporc/ InteroPorc.PNG
Resource:JointSNVMix Resource:BC Cancer Agency http://compbio.bccrc.ca/software/jointsnvmix/
Resource:L2L Microarray Analysis Tool University of Washington; Washington; USA http://depts.washington.edu/l2l/about.html L2L.PNG
Resource:LONI Software Resource:Laboratory of Neuro Imaging http://www.loni.ucla.edu/Software/ LONI Software.PNG
Resource:LYSIS Resource:Biomedical Simulations Resource http://bmsr.usc.edu/software/lysis/ LYSIS.PNG
Resource:Longhorn Array Database http://lad.icmb.utexas.edu/index_smd.shtml
Resource:Low Resolution Brain Electromagnetic Tomography University of Zurich; Zurich; Switzerland http://www.uzh.ch/keyinst/loreta LORETA.PNG
Resource:Lyngby Resource:THOR Center for Neuroinformatics http://hendrix.imm.dtu.dk/software/lyngby/ Lyngby.PNG
Resource:MAIA Institute of Cytology and Genetics of the Siberian Branch of the RAS; Novosibirsk; Russia http://mga.bionet.nsc.ru/soft/maia-1.0/ MAIA.PNG
Resource:MAPPFinder University of California at San Francisco; California; USA
Resource:Gene Map Annotator and Pathway Profiler
http://www.genmapp.org/help_v2/UsingMAPPFinder.htm MAPPFinder.PNG
Resource:MAUDS University of Malaga; Andalusia; Spain http://www.geb.uma.es/mauds
Resource:MEME Suite - Motif-based sequence analysis tools Resource:National Biomedical Computation Resource http://meme.nbcr.net/meme/ MEME Suite.PNG
Resource:MITRE Neuroinformatics MITRE Corporation http://www.mitre.org/news/digest/archives/2002/neuroinformatics.html
Resource:MRIcro Software Georgia Institute of Technology; Georgia; USA http://www.cabiatl.com/mricro/
Resource:Madagascar http://www.reproducibility.org/wiki/Main_Page
Resource:MaryGold Resource:SourceForge http://sourceforge.net/projects/metavar/
Resource:MatOFF Resource:NIMH CORTEX http://dally.nimh.nih.gov/matoff/matoff.html MatOFF.PNG
Resource:Mean Machine http://sourceforge.net/projects/meanmachine/
Resource:Microarray Literature-based Annotation Hebrew University of Jerusalem; Jerusalem; Israel http://bioinformatics.ekmd.huji.ac.il/milano/
Resource:Microcal Origin Microcal Software Inc. http://microcal-origin.software.informer.com/ Microcal Origin.PNG
Resource:Mini Analysis Program Synaptosoft Inc. http://www.synaptosoft.com/MiniAnalysis/
Resource:MinimumDistance Resource:Bioconductor http://www.bioconductor.org/packages/2.14/bioc/html/MinimumDistance.html
Resource:MitoRes Institute of Biomedical Technologies; Italy http://www2.ba.itb.cnr.it/MitoNuc/
Resource:Mutascope Resource:SourceForge http://sourceforge.net/projects/mutascope/
Resource:NIRS-SPM Korea Advanced Institute of Science and Technology; Daejeon; South Korea http://bisp.kaist.ac.kr/NIRS-SPM
Resource:NIS (NeuroImaging Statistics) University of Pittsburgh; Pennsylvania; USA http://kraepelin.wpic.pitt.edu/nis/
Resource:Neals DNA Mutation Site University of North Carolina at Chapel Hill; North Carolina; USA http://www.ibiblio.org/dnam/mainpage.html Neal's DNA Mutation Site.PNG
Resource:Neural Cipher Resource:The Cromwell Workshop http://neuronalarchitects.com/neural-cipher.html Neural Cipher.PNG
Resource:Neural Decoding Toolbox Massachusetts Institute of Technology; Massachusetts; USA http://www.readout.info NDT.PNG
Resource:Neural Systems and Graphics Computing Laboratory: Micro3D Software http://www.nesys.uio.no/Micro3D/
Resource:NeuroExplorer Plexon
Nex Technologies
http://www.neuroexplorer.com/ NeuroExplorer.PNG
Resource:NeuroMatic University College London; London; United Kingdom http://www.neuromatic.thinkrandom.com/
Resource:NeuroServ The MITRE Corporation http://neuroinformatics.mitre.org/projects.html
Resource:Neurolucida http://www.mbfbioscience.com/neurolucida
Resource:Neuronland: NLMorphologyConverter http://www.neuronland.net/NLMorphologyConverter/NLMorphologyConverter.html
Resource:Nitime Resource:Neuroimaging in Python http://nipy.org/nitime/
Resource:Nonparametric Prediction Activation Influence Reproducibility re-Sampling University of Minnesota Twin Cities; Minnesota; USA https://code.google.com/p/plsnpairs/
Resource:Normative Independent Component Analysis http://sites.google.com/site/marcocongedo/software/nica
Resource:Omixon Target Data Analysis Omixon Ltd. http://www.omixon.com/data-analysis-and-pro/
Resource:OntoMorph Tab University of California at San Diego; California; USA http://code.google.com/p/ontomorphtab/
Resource:PANTHER Evolutionary analysis of coding SNPs Resource:PANTHER http://www.pantherdb.org/tools/csnpScoreForm.jsp
Resource:PLINK Massachusetts General Hospital; Massachusetts; USA http://pngu.mgh.harvard.edu/purcell/plink/ Plink.PNG
Resource:POPBAM Resource:SourceForge
University of Rochester; New York; USA
http://popbam.sourceforge.net/
Resource:PV-Wave http://www.vni.com
Resource:Palamedes Toolbox University of Mississippi; Mississippi; USA
McGill University; Montreal; Canada
http://www.palamedestoolbox.org/ Palamedes.PNG
Resource:ParaView Kitware http://www.paraview.org/
Resource:PathCase: Metabolic Pathway Database System http://nashua.case.edu/PathwaysWeb/Web/
Resource:Piano Chalmers University of Technology; Gothenburg; Sweden
Resource:Bioconductor
http://www.sysbio.se/piano/
Resource:Poldracklab Portal University of Texas at Austin; Texas; USA http://www.poldracklab.org/software
Resource:PolyPhen: Polymorphism Phenotyping Harvard University; Massachusetts; USA http://genetics.bwh.harvard.edu/pph2/
Resource:PredSL Resource:University of Athens Biophysics and Bioinformatics Laboratory http://hannibal.biol.uoa.gr/PredSL/ PredSL.PNG
Resource:Prediction of Activity Spectra for Substances http://genexplain.com/pass
Resource:Protein Databank Fun http://pdbfun.uniroma2.it/
Resource:Psort Simon Fraser University; British Columbia; Canada http://www.psort.org PSORT.PNG
Resource:QGene Kansas State University; Kansas; USA http://www.qgene.org/ QGene.PNG
Resource:RAxML Resource:GitHub https://github.com/stamatak/standard-RAxML
Resource:SAFA Footprinting Software https://simtk.org/home/safa
Resource:SCRalyze Resource:SourceForge http://scralyze.sourceforge.net
Resource:SEER Datasets and Software Resource:Surveillance Epidemiology and End Results http://seer.cancer.gov/resources/ SEER Datasets & Software.PNG
Resource:SINOMO (SIngular NOde MOtifs) Newcastle University; Newcastle upon Tyne; United Kingdom http://www.biological-networks.org/pubs/suppl/sinomo/ SINOMO.PNG
Resource:SNPdat Resource:Google Code http://code.google.com/p/snpdat/
Resource:SeqGSEA Resource:Bioconductor http://bioconductor.org/packages/devel/bioc/html/SeqGSEA.html
Resource:SimToolDB Resource:SenseLab http://senselab.med.yale.edu/SimToolDB/ SimToolDB.PNG
Resource:Simpleaffy Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/simpleaffy.html
Resource:Software Distribution Sets University of Minnesota Twin Cities; Minnesota; USA http://socialbrain.wordpress.com/2009/09/30/neurovia-download-neuro-imaging-tools-software-brain-project-matlab-program-package-for-the-analysis-of-functional-neuroimages/
Resource:South African National Bioinformatics Institute: Resources http://www.sanbi.ac.za/resources/
Resource:Spark Resource:BC Cancer Agency http://sparkinsight.org Spark.PNG
Resource:Spike Sorting Evaluation Project Resource:German Neuroinformatics Node http://spike.g-node.org/ Spikesorting Evaluation.PNG
Resource:Spike Train Analysis Software by Attila Szucs: Orbital Spike 4 http://www.blki.hu/~szucs/OS3.html
Resource:SpliceSeq Resource:University of Texas MD Anderson Cancer Center http://bioinformatics.mdanderson.org/main/SpliceSeq:Overview
Resource:StRAnGER Resource:National Hellenic Research Foundation http://www.grissom.gr/stranger/ StRAnGER.PNG
Resource:Stacks University of Oregon; Oregon; USA http://creskolab.uoregon.edu/stacks/
Resource:Sub-Volume Thresholding Analysis Resource:Laboratory of Neuro Imaging
University of California Los Angeles; Los Angeles USA
http://www.loni.ucla.edu/~dinov/SVT.html
Resource:Summary of recordings of spike trains available for analysis and guide to their context and means for their analysis http://repositories.cdlib.org/mrrc/1
Resource:THEA - Tools for High-throughput Experiments Analysis Resource:Virtual Biology Lab http://thea.unice.fr/index-en.html
Resource:The Hamner Institute for Health Sciences: BMDExpress and The multiple-path particle dosimetry http://www.thehamner.org/technology-and-development/technology-transfer/index.html
Resource:TrED Chinese Academy of Medical Sciences; Beijing; China http://www.mgc.ac.cn/TrED/ TrED.PNG
Resource:TransFIC Pompeu Fabra University; Barcelona; Spain http://bg.upf.edu/transfic/home
Resource:Transporter Classification Database University of California at San Diego; California; USA http://www.tcdb.org/ TCDB.PNG
Resource:VARIANT Resource:Principe Felipe Research Centre; Valencia; Spain http://variant.bioinfo.cipf.es/
Resource:Visages Research Equipment Software University of Rennes 1; Rennes; France http://www.irisa.fr/visages/software-eng.html
Resource:Weighted Gene Co-expression Network Analysis University of California at Los Angeles; California; USA http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/
Resource:Yandell Lab Portal University of Utah; Utah; USA http://www.yandell-lab.org/software/index.html
Resource:asSeq University of North Carolina at Chapel Hill; North Carolina; USA http://bios.unc.edu/~weisun/software/asSeq.htm AsSeq.PNG
Resource:bamova University of Wyoming; Wyoming; USA http://www.uwyo.edu/buerkle/software/bamova/
Resource:caTRIP Resource:Cancer Biomedical Informatics Grid https://cabig.nci.nih.gov/tools/caTRIP CaTRIP.PNG
Resource:categoryCompare Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/categoryCompare.html
Resource:cn.FARMS Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/cn.farms.html
Resource:factDesign Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/factDesign.html
Resource:genArise Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/genArise.html
Resource:genomics Workbench Columbia University; New York; USA http://www.geworkbench.org
Resource:go-moose Resource:SourceForge
Resource:Berkeley Bioinformatics Open-Source Projects
Lawrence Berkeley National Laboratory
http://geneontology.svn.sourceforge.net/viewvc/geneontology/go-moose/ Go-moose.PNG
Resource:mach2qtl University of Michigan; Michigan; USA http://www.sph.umich.edu/csg/abecasis/MACH/download/
Resource:metaSeq Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/metaSeq.html
Resource:metahdep Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/metahdep.html
Resource:ngsTools Resource:GitHub https://github.com/mfumagalli/ngsTools
Resource:nsSNPAnalyzer University of Tennessee Health Science Center; Tennessee; USA http://snpanalyzer.uthsc.edu/
Resource:oneClickCGH InfoQuant https://www.infoquant.com/oneclickcgh
Resource:pickgene Resource:Bioconductor http://www.bioconductor.org/packages/release/bioc/html/pickgene.html
Resource:r3Cseq University of Bergen; Bergen; Norway
Resource:Bioconductor
http://r3cseq.genereg.net/Site/index.html

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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Data analysis softwareRDF feed
Created9 October 2007  +
CurationStatusuncurated  +
DefinitionA resource that provides an application or program that is used to gather, model, and transform data with the goal of highlighting useful information, suggesting conclusions, and supporting decision making.
Idbirnlex_2211  +
LabelData analysis software  +
ModifiedDate7 June 2012  +
SuperCategoryData processing software  +