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Gold standard or authority

Name: Gold standard or authority
Description: A database that has become the standard or authority in a particular domain.
Super-category: NIF annotation standard
Id: nlx_37000
Link to OWL / RDF: Download this content as OWL/RDF


Detail

Synonym Has role Is part of DefiningCitation
Resource:AceView AceView genes Database Resource:NCBI http://www.ncbi.nih.gov/IEB/Research/Acembly/
Resource:ArrayExpress Archive ArrayExpress - functional genomics data Database
Data repository
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/arrayexpress/
Resource:BioModels Database BioModels Database
BioModels
BioModels Database - A Database of Annotated Published Models
Database
Data repository
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/biomodels-main/
Resource:BioSample Database at EBI BioSample Database at the EBI
BioSample Database
BioSD - BioSample Database
BioSD at EBI
BioSamples database
BioSamples Database at EBI
EBI BioSample Database
BioSamples
Database
Biomaterial supply resource
Cell repository
Biospecimen repository
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/biosamples/
Resource:Bookshelf NCBI Bookshelf Database
Book
Storage service resource
Resource:NCBI http://www.ncbi.nlm.nih.gov/sites/entrez?db=books
Resource:CHEBI Chemical Entities of Biological Interest Database
Ontology
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/chebi/
Resource:COG COGs
Clusters of Orthologous Groups of proteins
COGs - Phylogenetic classification of proteins encoded in complete genomes
COG Database
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/COG
Resource:CSA - Catalytic Site Atlas Catalytic Site Atlas Software resource
Database
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/thornton-srv/databases/CSA/
Resource:ChEMBLdb ChEMBL database Database Resource:European Bioinformatics Institute https://www.ebi.ac.uk/chembl/
Resource:CiteXplore literature searching CiteXplore Database
Web service
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/citexplore/
Resource:CluSTr CluS+Tr Database Resource:European Bioinformatics Institute http://www.ebi.ac.uk/clustr/
Resource:Consensus CDS NCBI Consensus CDS protein set
CCDS Database
NCBI CCDS Database
Database Resource:NCBI
Resource:European Bioinformatics Institute
Wellcome Trust Sanger Institute; Hinxton; United Kingdom
University of California at Santa Cruz; California; USA
http://www.ncbi.nlm.nih.gov/CCDS/
Resource:Conserved Domain Database Conserved Domains Database 3D spatial image
Database
Resource:NCBI http://www.ncbi.nlm.nih.gov/cdd
Resource:DDBJ - DNA Data Bank of Japan DNA Data Bank of Japan
DNA DataBank of Japan
DDBJ - DNA Data Bank of Japan
Database
Data repository
National Institute of Genetics; Shizuoka; Japan http://www.ddbj.nig.ac.jp
Resource:Database of Genomic Variants Archive DGVarchive Database
Data repository
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/dgva/
Resource:Database of Secondary Structure Assignments Software resource
Database
Radboud University Nijmegen; Nijmegen; Netherlands http://swift.cmbi.ru.nl/gv/dssp/
Resource:Database of expressed sequences or mRNA dbEST Data repository
Database
Resource:NCBI http://www.ncbi.nlm.nih.gov/dbEST/
Resource:EB-eye Search Database Resource:European Bioinformatics Institute http://www.ebi.ac.uk/ebisearch/
Resource:EBI Dbfetch Dbfetch
Database fetch
emblfetch
EMBL fetch
Database Resource:European Bioinformatics Institute http://www.ebi.ac.uk/Tools/dbfetch/dbfetch
Resource:ENA Sequence Version Archive Sequence Version Archive
EMBL-SVA
Database Resource:European Bioinformatics Institute http://www.ebi.ac.uk/cgi-bin/sva/sva.pl/
Resource:ENZYME Enzyme nomenclature database Database
Data repository
Resource:Swiss Institute of Bioinformatics http://www.expasy.org/enzyme/
Resource:Electron Microscopy Data Bank Electron Microscopy Data Bank (EMDB) at PDBe
Electron Microscopy Data Bank at PDBe
Database
Data analysis service
Data repository
Resource:PDBe - Protein Data Bank in Europe http://www.ebi.ac.uk/pdbe/emdb/
Resource:Ensembl Database
Data analysis service
Web service
Resource:European Bioinformatics Institute
Wellcome Trust Sanger Institute; Hinxton; United Kingdom
http://www.ensembl.org/
Resource:Ensembl Genomes Ensembl Genome
EnsemblGenomes
Ensembl Genomes: Extending Ensembl across the taxonomic space
Database
Web service
Resource:European Bioinformatics Institute http://www.ensemblgenomes.org/
Resource:Entrez GEO DataSets Gene Expression Omnibus DataSets
Gene Expression Omnibus Data Sets
GEO DataSets
GEO Data Sets
Service resource
Semi structured knowledge
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/gds
Resource:Entrez GEO Profiles GEO Profiles
Gene Expression Omnibus Profiles
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/sites/entrez?db=geo
Resource:Entrez PopSet Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/popset
Resource:Enzyme Nomenclature Database
International standard specification
Data repository
Data set
Queen Mary University of London; London; United Kingdom http://www.chem.qmul.ac.uk/iubmb/enzyme/
Resource:Enzyme Structures Database Database
Image collection
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/thornton-srv/databases/enzymes/
Resource:Europe PubMed Central UK PubMed Central Database
Bibliography
Web service
Europe PMC Funders Group
Resource:European Bioinformatics Institute
Resource:Mimas
Resource:National Centre for Text Mining
British Library
http://europepmc.org/
Resource:European Nucleotide Archive European Nucleotide Archive Database
Data repository
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/ena/
Resource:FunTree Database Resource:European Bioinformatics Institute http://www.ebi.ac.uk/thornton-srv/databases/FunTree/
Resource:GENSAT at NCBI - Gene Expression Nervous System Atlas Database Resource:NCBI http://www.ncbi.nlm.nih.gov/projects/gensat/
Resource:GO GO - Gene Ontology
Gene Ontology
Ontology
International standard specification
Database
Gene Ontology Consortium
Resource:OBO
http://www.geneontology.org/
Resource:GenBank Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/Genbank/index.html
Resource:Gene Expression Atlas Database
Expression atlas
Blog
Web service
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/gxa/
Resource:Gene Expression Omnibus NCBI GEO Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/geo/
Resource:Genome Project Database Entrez Genome Project
Genome Project: A Collection of Genome Specific Information
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=genomeprj
Resource:Genome Reviews Genome Reviews Database Database Resource:European Bioinformatics Institute http://www.ebi.ac.uk/GenomeReviews/
Resource:Genome survey sequence database dbGSS
Entrez GSS
NCBI dbGSS
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/sites/entrez?db=nucgss, http://www.ncbi.nlm.nih.gov/dbGSS/
Resource:HGNC genenames.org
HUGO Gene Nomenclature Committee
HGNC Database
HGNC - HUGO Gene Nomenclature Committee
International standard specification
Database
Data set
Resource:European Bioinformatics Institute http://www.genenames.org/
Resource:HIV-1, Human Protein Interaction Database HIV-1 Protein Interaction Database Database Resource:NCBI http://www.ncbi.nlm.nih.gov/RefSeq/HIVInteractions/index.html
Resource:HSSP Homology-derived Secondary Structure of Proteins
Homology derived Secondary Structure of Proteins
homology-derived structures of proteins
HSSP database
HSSP - Homology derived Secondary Structure of Proteins
Database Radboud University Nijmegen; Nijmegen; Netherlands http://swift.cmbi.ru.nl/gv/hssp/
Resource:High Throughput Genomic Sequences Division HTG Sequence
HTG database
NCBI High-Throughput Genomic Sequences
High-Throughput Genomic Sequences
HTG GenBank Division
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/HTGS/
Resource:HomoloGene Service resource
Database
Resource:NCBI http://www.ncbi.nlm.nih.gov/homologene
Resource:Human Proteomics Initiative Human Proteome Initiative
UniProtKB/Swiss-Prot Human Proteome Initiative
Database Resource:Swiss Institute of Bioinformatics http://www.ebi.ac.uk/swissprot/hpi/hpi.html
Resource:IMGT - the international ImMunoGeneTics information system IMGT/LIGM
ImMunoGeneTics
ImMunoGeneTics Information System
Topical portal
Knowledge environment resource
Database
Data analysis service
Centre National de la Recherche Scientifique http://www.imgt.org/
Resource:IMGT/HLA International ImMunoGeneTics/Human Leukocyte Antigen Database
IMGT/HLA Database
IMGT/HLA DB
Database
Data repository
Data analysis service
Resource:European Bioinformatics Institute
Anthony Nolan Research Institute
http://www.ebi.ac.uk/imgt/hla/
Resource:IPD - Immuno Polymorphism Database IPD - The Immuno Polymorphism Database
IPD-The Immuno Polymorphism Database
Database Resource:European Bioinformatics Institute http://www.ebi.ac.uk/ipd/
Resource:IUPHAR Database International Union of Pharmacology Database
International Union of Basic and Clinical Pharmacology Database
Database
International standard specification
Resource:NC-IUPHAR http://www.iuphar-db.org
Resource:IntAct Database
Data analysis service
Data repository
Source code
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/intact
Resource:IntEnz- Integrated relational Enzyme database Database Resource:European Bioinformatics Institute
Resource:Swiss Institute of Bioinformatics
http://www.ebi.ac.uk/intenz
Resource:InterPro InterPro protein sequence analysis and classification
InterPro: protein sequence analysis & classification
Data analysis service
Database
Web service
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/interpro
Resource:MEDLINE Database
Bibliography
National Library of Medicine http://www.nlm.nih.gov/bsd/pmresources.html
Resource:MGI Mouse Genome Informatics Database
Data repository
Resource:Jackson Laboratory http://www.informatics.jax.org
Resource:MaizeGDB Maize Genetics and Genomics Database Organism-related portal
Database
Data analysis service
Data repository
United States Department of Agriculture http://www.maizegdb.org
Resource:MeSH Medical Subject Headings
MeSH (Medical Subject Headings)
Ontology
Database
National Library of Medicine http://www.nlm.nih.gov/mesh/meshhome.html
Resource:MedlinePlus Database
Video resource
National Library of Medicine http://www.nlm.nih.gov/medlineplus/druginformation.html
Resource:Molecular Imaging and Contrast Agent Database Molecular Imaging and Contrast Agent Database (MICAD) Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/books/NBK5330/
Resource:Molecular Modeling DataBase Entrez Structure
Structure database
NCBI Structure
Structure (Molecular Modeling Database)
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/structure
Resource:NCBI BioProject NCBI BioProject Database Database Resource:NCBI http://www.ncbi.nlm.nih.gov/bioproject
Resource:NCBI BioSample BioSample Database
NCBI BioSample Database
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/biosample
Resource:NCBI BioSystems Database NCBI BioSystems
BioSystems Database
Database
Data analysis service
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/biosystems/
Resource:NCBI GenBank via FTP GenBank via FTP Database Resource:NCBI http://www.ncbi.nlm.nih.gov/genbank/GenBankFtp.html
Resource:NCBI Gene Gene Database
Entrez Gene
Gene - Gene and mapped phenotypes
Gene - Gene mapped phenotypes
GeneID
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/gene
Resource:NCBI Genome Genome Database
Genome: Information by genome sequence
Entrez Genomes
Entrez Genome
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/genome
Resource:NCBI Nucleotide CoreNucleotide
Nucleotide Database
Nucleotide
Entrez Nucleotide
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/nuccore
Resource:NCBI Protein Protein Database
Entrez Protein Database
Protein sequence database
Entrez Protein
NCBI Protein Database
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein
Resource:NCBI Sequence Read Archive Sequence Read Archive
NCBI SRA
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/sra
Resource:NCBI Structure Topical portal
Database
3D spatial image
Data analysis service
Resource:NCBI http://www.ncbi.nlm.nih.gov/Structure/index.shtml
Resource:NCBI Taxonomy Browser Taxonomy Browser
Entrez Taxonomy Browser
NCBI Taxonomy Database
NCBI Taxonomy
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html
Resource:NCBI dbRBC dbRBC Database Topical portal
Database
Resource:NCBI
Medical University of Graz; Graz; Austria
http://www.ncbi.nlm.nih.gov/projects/gv/rbc/main.fcgi?cmd=init
Resource:NEWT UniProt Taxonomy Database
UniProt Taxonomy
UniProtKB taxonomy database
Database Resource:UniProt http://www.uniprot.org/taxonomy/
Resource:NLM Catalog Database Resource:NCBI http://www.ncbi.nlm.nih.gov/sites/entrez?db=journals
Resource:OMIA - Online Mendelian Inheritance in Animals Online Mendelian Inheritance in Animals Database University of Sydney; Sydney; Australia
Resource:NCBI
http://omia.angis.org.au/
Resource:OMIM OMIM - Online Mendelian Inheritance in Man
Online Mendelian Inheritance in Man
Database Johns Hopkins University School of Medicine; Maryland; USA
Resource:NCBI
http://omim.org
Resource:Ontology Lookup Service OLS - Ontology Lookup Service
Ontology Lookup Service (OLS)
Web service
Source code
Database
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/ontology-lookup/
Resource:PANDIT : Protein and Associated Nucleotide Domains with Inferred Trees Protein and Associated Nucleotide Domains with Inferred Trees Database Resource:European Bioinformatics Institute http://www.ebi.ac.uk/goldman-srv/pandit
Resource:PDB Protein Data Bank
RCSB Protein Data Bank
Database
Web service
Data repository
University of California at San Diego; California; USA
Rutgers University; New Jersey; USA
http://www.rcsb.org/pdb/
Resource:PDBe - Protein Data Bank in Europe Protein Data Bank in Europe
Protein Data Bank Europe
Database
Data repository
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/pdbe/index.html
Resource:PDBj - Protein Data Bank Japan Protein Data Bank Japan Database
Data repository
Osaka University; Osaka; Japan http://www.pdbj.org/
Resource:PDBsum Database
3D spatial image
Data analysis service
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/pdbsum
Resource:PIR Protein Information Resource
PIR - Protein Information Resource
Topical portal
Data analysis service
Database
University of Delaware; Delaware; USA
Georgetown University; Washington D.C.; USA
http://proteininformationresource.org/
Resource:Parasite genome databases and genome research resources Parasite Genome Database Database
Topical portal
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/parasites/parasite-genome.html
Resource:Patent Abstracts Database Resource:European Bioinformatics Institute http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+query+-libList+PATABS
Resource:Protein Clusters Protein Clusters Database
Entrez Protein Clusters
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/proteinclusters
Resource:PubChem Database
Service resource
Data repository
Resource:NCBI http://pubchem.ncbi.nlm.nih.gov/
Resource:PubChem BioAssay NCBI PubChem BioAssay
PubChem BioAssay Database
Service resource
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay&cmd=search
Resource:PubChem Compound PubChem Compound Database
PubChem Compounds Database
Pccompound
3D spatial image
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/pccompound
Resource:PubChem Substance PubChem Substance Database
PubChem Substances Database
Pcsubstance
3D spatial image
Database
Data repository
Resource:PubChem
Resource:NCBI
http://www.ncbi.nlm.nih.gov/pcsubstance?db=pcsubstance
Resource:PubMed Pub Med Database Resource:NCBI http://www.ncbi.nlm.nih.gov/pubmed/
Resource:PubMed Central Database
Storage service resource
Resource:NCBI http://www.ncbi.nlm.nih.gov/pmc/
Resource:QuickGO Quick GO Database
Ontology
Software resource
Web service
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/QuickGO/
Resource:RESID RESID Database of Protein Modifications
RESID Database
RESID Database at the EBI
RESID Database at PIR
Database Resource:PIR http://pir.georgetown.edu/resid/
Resource:RGD Rat Genome Database Data repository
Database
Medical College of Wisconsin; Wisconsin; USA http://rgd.mcw.edu
Resource:RHEA Database
Data repository
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/rhea/
Resource:Reactome Database
Data analysis service
Web service
Book
Resource:Ontario Institute for Cancer Research
Resource:Cold Spring Harbor Laboratory
Resource:European Bioinformatics Institute
New York University School of Medicine; New York; USA
http://www.reactome.org
Resource:RefSeq NCBI RefSeq
NCBI Reference Sequence
Reference Sequence
NCBI Reference Sequences
NCBI Reference Sequence Database
RefSeq: NCBI Reference Sequence Database
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/RefSeq/
Resource:SBO Systems Biology Ontology Ontology
Database
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/sbo/main/
Resource:SGD Saccharomyces Genome Database Database
Standard specification
Data analysis service
Stanford University School of Medicine; California; USA http://www.yeastgenome.org/
Resource:SRS Sequence Retrieval System
EBI SRS server
EBI SRS
Database
Data analysis service
Resource:European Bioinformatics Institute http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+srsq2+-noSession
Resource:TAIR The Arabidopsis Information Resource Database
Data repository
Data analysis service
Experimental protocol
Carnegie Institution for Science http://www.arabidopsis.org
Resource:Taxonomy Taxonomy via SRS Database Resource:European Bioinformatics Institute http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+query+-libList+TAXONOMY
Resource:UniGene UniGene: Organized View of the Transcriptome
NCBI UniGene
Entrez UniGene
Database Resource:NCBI http://www.ncbi.nlm.nih.gov/unigene
Resource:UniParc UniProt Archive
Sequence Archive
Database Resource:UniProt http://www.uniprot.org/uniparc/
Resource:UniParc at the EBI Database Resource:European Bioinformatics Institute http://www.ebi.ac.uk/uniparc/
Resource:UniProt UniProt: The Universal Protein Resource
Universal Protein Resource
Database
Data repository
Data analysis service
Resource:European Bioinformatics Institute
Resource:Swiss Institute of Bioinformatics
Resource:PIR
http://www.uniprot.org/
Resource:UniProtKB UniProt Knowledgebase Database
Data repository
Resource:UniProt http://www.uniprot.org/help/uniprotkb
Resource:UniRef at the EBI UniProt Reference Clusters
UniProt Reference Clusters database
UniProt NREF
UniProt Non-redundant Reference
UniProt Non-redundant Reference database
Database Resource:European Bioinformatics Institute http://www-test.ebi.ac.uk/uniref/
Resource:UniSTS Entrez UniSTS
NCBI UniSTS
UniSTS: Integrating Markers and Maps
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/unists
Resource:UniSave UniProtKB Sequence/Annotation Version Archive Database Resource:European Bioinformatics Institute http://www.ebi.ac.uk/uniprot/unisave/?help=0&session=
Resource:Worldwide Protein Data Bank World Wide Protein Data Bank Database http://www.wwpdb.org/
Resource:WormBase Worm Base Database
Data repository
Data analysis service
Software resource
Wellcome Trust Sanger Institute; Hinxton; United Kingdom
California Institute of Technology; California; USA
Resource:Cold Spring Harbor Laboratory
Washington University in St. Louis; Missouri; USA
http://www.wormbase.org
Resource:Xenbase Xenbase: Xenopus laevis and tropicalis biology and genomics resource Database
Atlas
Data repository
Image repository
University of Calgary; Alberta; Canada http://www.xenbase.org/
Resource:ZFIN Zebrafish Database
Zebrafish Model Organism Database
Zebrafish Information Network
Database
Data repository
University of Oregon; Oregon; USA http://zfin.org
Resource:dbEST EST Database
Expressed Sequence Tag Database
NCBI dbEST
dbEST: database of "Expressed Sequence Tags"
Entrez EST
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/dbEST/index.html
Resource:dbGaP at NCBI Database of Genotypes and Phenotypes (dbGaP)
Database of Genotypes and Phenotypes
NCBI dbGaP
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/gap
Resource:dbProbe NCBI Probe Database
Probe Database
ProbeDB
Entrez Probe Database
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/probe
Resource:dbSNP Entrez SNP
Entrez SNP - Single Nucleotide Polymorphism
NCBI Single Nucleotide Polymorphism
NCBI Short Genetic Variations
NCBI Short Genetic Variations (SNV) database
NCBI Short Genetic Variations Database
SNV Database
NCBI SNV Database
dbSNP: Database for Short Genetic Variations
Database
Data repository
National Human Genome Research Institute
Resource:NCBI
http://www.ncbi.nlm.nih.gov/SNP/
Resource:dbSTS NCBI dbSTS
dbSTS: database of "Sequence Tagged Sites"
NCBI dbSTS: database of "Sequence Tagged Sites"
Database of Sequence Tagged Sites
Sequence Tagged Sites Database
Database
Data repository
Resource:NCBI http://www.ncbi.nlm.nih.gov/dbSTS/

 

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Facts about Gold standard or authorityRDF feed
CurationStatusuncurated  +
DefinitionA database that has become the standard or authority in a particular domain.
Idnlx_37000  +
LabelGold standard or authority  +
ModifiedDate23 June 2011  +
SuperCategoryNIF annotation standard  +