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Resource:NIF Data Federation

Name: Resource:NIF Data Federation
Description: Service that partners with the community to expose and simultaneously drill down into individual databases and data sets and return relevant content. This type of content, part of the so called “hidden Web,” is typically not indexed by existing web search engines. Every record links back to the originating site.

In order for NIF to directly query these independently maintained databases and datasets, database providers must register their database or dataset with the NIF Data Federation and specify permissions. Databases are concept mapped for ease of sharing and to allow better understanding of the results. Learn more about registering your resource, http://neuinfo.org/nif_components/disco/interoperation.shtm

Search results are displayed under the Data Federation tab and are categorized by data type and nervous system level. In this way, users can easily step through the content of multiple resources, all from the same interface.

Each federated resource individually displays their query results with links back to the relevant datasets within the host resource. This allows users to take advantage of additional views on the data and tools that are available through the host database. The NIF site provides tutorials for each resource, indicated by the "Professor Icon" professor icon showing users how to navigate the results page once directed there through the NIF. Additionally, query results may be exported as an Excel document.

Note: NIF is not responsible for the availability or content of these external sites, nor does NIF endorse, warrant or guarantee the products, services or information described or offered at these external sites.

Integrated Databases: Theses "virtual" databases created by NIF and other partners combine related data indexed from multiple databases and combine them into one view for easier browsing.

  • Integrated Animal View
  • Integrated Brain Gene Expression View
  • Integrated Disease View
  • Integrated Nervous System Connectivity View
  • Integrated Podcasts View
  • Integrated Software View
  • Integrated Video View
  • Integrated Jobs
  • Integrated Blogs
For a listing of the Federated Databases see, http://neuinfo.org/mynif/databaseList.php or refer to the "Resources Listed by NIF Data Federation" table below.
Other Name(s): Neuroscience Information Framework Data Federation
Abbreviation: Data Federation
Parent Organization: Resource:Neuroscience Information Framework
Supporting Agency: NIDA, U.S. Department of Health and Human Services, Resource:NIH Blueprint for Neuroscience Research
Grant: HHSN27120080035C
Resource Type(s): Portal, Service resource
Resource: Resource
URL: https://neuinfo.org/mynif/search.php?list=cover&q=*
Old URL(s): http://neuinfo.org/nif/nifgwt.html?query=*
*Id: nlx_81822
Used By: Resource:SciCrunch, Resource:Monarch Initiative, Resource:dkNET
Listed By: Resource:3DVC
Availability: Refer to individual databases
Address: Neuroscience Information Framework, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0446
Keywords: Semantics, Neuroscience, Animal, Annotation, Antibody, Biospecimen, Brain Activation Foci, Clinical Trial, Connectivity, Dataset, Disease, Drug, Grant, Image, Microarray, Model, Multimedia, Negative Data, Pathway, People, Plasmid, Registry, Software, Brain Region, Cell, Gene, Molecule, Multi-Level, Nervous System, Nervous System Function, Model
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:NIF Data Federation

Resource:60-Second Mind, Resource:A Lady Scientist, Resource:ASAP, Resource:ASPGD, Resource:ATCC, Resource:Access-ScienceJobs.co.uk, Resource:All In The Mind, Resource:Allen Mouse Brain Atlas, Resource:Allen Mouse Brain Connectivity Atlas, Resource:American Journal of Psychiatry Podcasts, Resource:AmiGO, Resource:Antibody Registry, Resource:Arredondo ANT fNIRS dataset1, Resource:Avian Brain Circuitry Database, Resource:BAMS Cells, Resource:BAMS Connectivity, Resource:BAMS Nested Regions, Resource:BioGRID, Resource:BioNOT, Resource:BioNumbers, Resource:BioPortfolio, Resource:Biocompare, Resource:Biointeractive, Resource:Brain Architecture Management System, Resource:Brain Machine Interface Platform, Resource:Brain Science Podcast, Resource:BrainInfo, Resource:BrainMaps.org, Resource:BrainPod, Resource:BrainSpan: Exon microarray summarized to genes, Resource:BrainSpan: Exon microarray summarized to probe sets, Resource:BrainSpan: RNA-Seq exons, Resource:BrainSpan: RNA-Seq exons summarized to genes, Resource:Brede Database, Resource:CENtral Science, Resource:CIL-Cell Image Library, Resource:Candida Genome Database, Resource:Cassandras Tears, Resource:Cell Centered Database, Resource:CellML Model Repository, Resource:Cerebellar Platform, Resource:Clarity resources, Resource:ClinVar, Resource:CoCoMac, Resource:Community Structure-Activity Resource, Resource:Comparative Toxicogenomics Database, Resource:DISCO, Resource:Daily Scan, Resource:Daring Nucleic Adventures - genegeek, Resource:Developmental Therapeutics Program … further results

Curation status: Curated

For Resource Owners:

A sitemap will keep your NIF Registry description up-to-date and inform search engines about your resource.

Please login to create the sitemap. (top right)

Learn more about what NIF can do for your resource.
Proudly proclaim your inclusion in NIF by displaying the "Registered with NIF" button on your site.

Notes

This page uses this default form:Resource

Data Federation News

Resources Used by NIF Data Federation

ExampleImage Id Has role Is part of DefiningCitation
Resource:1000 Functional Connectomes Project 1000 FCP.PNG nlx_144428 Data repository
Image collection
Image repository
Catalog
Resource:NITRC http://fcon_1000.projects.nitrc.org/
Resource:Addgene Addgene.jpg nif-0000-11872 Topical portal
Biospecimen repository
Biomaterial supply resource
http://www.addgene.org
Resource:Aging Genes and Interventions Database Aginggenesdb.png nif-0000-23326 Database
Data repository
University of Washington; Washington; USA http://uwaging.org/genesdb/
Resource:Animal QTLdb Animal QTLdb.PNG nif-0000-02550 Database
Data repository
Iowa State University; Iowa; USA
Resource:NAGRP Bioinformatics Coordination Program
http://www.animalgenome.org/cgi-bin/QTLdb/index
Resource:ArrayExpress ArrayExpress.PNG nif-0000-30123 Database
Data repository
Catalog
Resource:European Bioinformatics Institute http://www.ebi.ac.uk/arrayexpress/
Resource:Beta Cell Biology Consortium BCBC.PNG nlx_144143 Consortium
Database
Data repository
Biospecimen repository
Cell repository
Organism supplier
Experimental protocol
Antibody supplier
Vanderbilt University; Tennessee; USA http://www.betacell.org/
Resource:CRCNS Crcns.png nif-0000-00255 Catalog
Data repository
University of California at Berkeley; California; USA http://crcns.org
Resource:Caenorhabditis Genetics Center Cgc.jpg nif-0000-00240 Organism supplier
Biospecimen repository
Standard specification
Cell repository
University of Minnesota Twin Cities; Minnesota; USA http://www.cbs.umn.edu/CGC/
Resource:ChEMBLdb ChEMBL.PNG nlx_54579 Database Resource:European Bioinformatics Institute https://www.ebi.ac.uk/chembl/
Resource:Clinical Genomic Database Clinical Genomic Database.PNG nlx_152872 Database National Human Genome Research Institute http://research.nhgri.nih.gov/CGD/
Resource:Clinical Trials Network (CTN) Data Share Ctn.jpg nif-0000-21981 Catalog Resource:National Drug Abuse Treatment Clinical Trials Network http://datashare.nida.nih.gov/
Resource:Clinicaltrials.gov: A Service Of The National Institutes Of Health Clinicaltrials.png nif-0000-21091 Database
Data repository
Catalog
National Library of Medicine http://clinicaltrials.gov/
Resource:Data.gov Science and Research Data Catalog Science & Research Data Catalog.PNG nlx_158294 Catalog
Database
Resource:Data.gov https://catalog.data.gov/dataset?groups=research9385#topic=research_navigation
Resource:Diabetic Complications Consortium DiaComp.PNG nlx_152636 Funding resource
Database
Experimental protocol
Tissue bank
Consortium
Georgia Regents University; Georgia; USA http://www.diacomp.org
Resource:Drug Design Data Resource nlx_158375 Project portal
Database
Resource:SciCrunch
University of Michigan; Michigan; USA
Resource:Educational Resources in Neuroscience nlx_143786 Training resource
Database
Catalog
Resource:Society for Neuroscience http://erin.sfn.org/
Resource:GO Go.png nif-0000-02915 Ontology
International standard specification
Database
Gene Ontology Consortium http://www.geneontology.org/
Resource:Gait in Parkinsons Disease Gait in Parkinsons Disease.PNG nif-0000-00248 Database Resource:Physiobank http://www.physionet.org/physiobank/database/gaitpdb/
Resource:Gene Expression Omnibus Geo.gif nif-0000-00142 Database
Data repository
Catalog
Resource:NCBI http://www.ncbi.nlm.nih.gov/geo/
Resource:Grants.gov Grantsgov.gif nif-0000-22393 Funding resource http://www07.grants.gov/applicants/find_grant_opportunities.jsp
Resource:Health.Data.gov Health.Data.gov.PNG nlx_143714 Database
Software resource
Resource:Data.gov http://www.healthdata.gov/
Resource:Human Life-Table Database Human Life-Table Database.PNG nlx_151833 Data set Max Planck Institute for Demographic Research; Mecklenburg-Vorpommern; Germany http://www.lifetable.de/
Resource:Integrated Blogs Integrated Blogs.PNG nlx_144461 Blog
Narrative resource
Resource:Integrated https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-13
Resource:Integrated Clinical Trials Integrated Clinical Trials.PNG nlx_151342 Database Resource:Integrated https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-5
Resource:Integrated Grants nlx_156706 Database Resource:Integrated https://neuinfo.org/mynif/search.php?q=*&cf=Grants&t=indexable&nif=nlx_154697-16
Resource:Integrated Videos Integrated Videos.PNG nlx_13182 Video resource Resource:Integrated https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-11
Resource:Intestinal Stem Cell Consortium ISCC.PNG nlx_152862 Consortium
Database
Catalog
Experimental protocol
City of Hope; California; USA http://iscc.coh.org/
Resource:Lifespan Observations Database Lifespan Observations Database.PNG nlx_153873 Database Resource:Sageweb http://lifespandb.sageweb.org/
Resource:NITRC-IR File:NITRC-IR.PNG nlx_18447 Image database
Image repository
Database
Catalog
Resource:NITRC http://www.nitrc.org/ir/
Resource:NeuroSynth NeuroSynth.PNG nlx_55906 Database
Source code
University of Texas at Austin; Texas; USA http://neurosynth.org
Resource:NeuroVault nlx_158106 Image repository http://neurovault.org/
Resource:One Mind Biospecimen Bank Listing One Mind One Voice Bio-repository Cosmic Landscape.PNG nlx_143622 Biomaterial supply resource
Tissue bank
Cell repository
Brain bank
Catalog
Resource:One Mind for Research
Resource:Neuroscience Information Framework
Resource:American Brain Coalition
http://neuinfo.org/onemind/index.php?q=*&b=0&r=20
Resource:PDB PDB.PNG nif-0000-00135 Database
Web service
Data repository
University of California at San Diego; California; USA
Rutgers University; New Jersey; USA
http://www.rcsb.org/pdb/
Resource:Physiobank Physiobank.png nlx_48903 Database
Data repository
Catalog
Resource:PhysioNet http://physionet.org/physiobank/
Resource:RanchoBiosciences Rancho logo RGB.jpg nlx_157710 Core facility
Catalog
http://ranchobiosciences.com/free-downloads/
Resource:SciCrunch Registry SciCrunch Resource Registry.PNG nlx_144509 Database
Catalog
Resource:Neuroscience Information Framework
Resource:NeuroLex
Resource:SciCrunch
https://neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_144509-1
Resource:SumsDB SumsDB.jpg nif-0000-00016 Atlas
Database
Data repository
Data analysis service
Image repository
Washington University School of Medicine in St. Louis; Missouri; USA http://sumsdb.wustl.edu/sums/
Resource:WU-Minn HCP 500 Subjects MR and MEG Release nlx_158287 Data set Resource:WU-Minn Consortium: Human Connectome Project http://www.humanconnectome.org/documentation/S500/
Resource:WikiPathways WikiPathways.PNG nif-0000-20925 Wiki University of California at San Francisco; California; USA
Maastricht University; Maastricht; Netherlands
http://wikipathways.org/
Resource:anage AnAge.PNG nlx_152700 Database Resource:Human Ageing Genomic Resources http://genomics.senescence.info/species/
Resource:elements of morphology Human Malformation Terminology.PNG nlx_157874 Data set
International standard specification
National Human Genome Research Institute http://elementsofmorphology.nih.gov/
Resource:studyforrest.org Studyforrest.org.PNG nlx_156710 Data repository
Image repository
Otto-von-Guericke University Magdeburg; Saxony-Anhalt; Germany http://studyforrest.org


Export Resources Used by NIF Data Federation

CSV

Contributors

Aarnaud, Akash, Bandrow



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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:NIF Data FederationRDF feed
AbbrevData Federation  +
AddressNeuroscience Information Framework  +, University of California  +, San Diego  +, 9500 Gilman Drive  +, La Jolla  +, and CA 92093-0446  +
AvailabilityRefer to individual databases  +
CurationStatuscurated  +
DefiningCitationhttps://neuinfo.org/mynif/search.php?list=cover&q=*  +
DefinitionService that partners with the community t Service that partners with the community to expose and simultaneously drill down into individual databases and data sets and return relevant content. This type of content, part of the so called “hidden Web,” is typically not indexed by existing web search engines. Every record links back to the originating site.

In order for NIF to directly query these independently maintained databases and datasets, database providers must register their database or dataset with the NIF Data Federation and specify permissions. Databases are concept mapped for ease of sharing and to allow better understanding of the results. Learn more about registering your resource, http://neuinfo.org/nif_components/disco/interoperation.shtm

Search results are displayed under the Data Federation tab and are categorized by data type and nervous system level. In this way, users can easily step through the content of multiple resources, all from the same interface.

Each federated resource individually displays their query results with links back to the relevant datasets within the host resource. This allows users to take advantage of additional views on the data and tools that are available through the host database. The NIF site provides tutorials for each resource, indicated by the "Professor Icon" professor icon showing users how to navigate the results page once directed there through the NIF. Additionally, query results may be exported as an Excel document.

Note: NIF is not responsible for the availability or content of these external sites, nor does NIF endorse, warrant or guarantee the products, services or information described or offered at these external sites.

Integrated Databases: Theses "virtual" databases created by NIF and other partners combine related data indexed from multiple databases and combine them into one view for easier browsing.

  • Integrated Animal View
  • Integrated Brain Gene Expression View
  • Integrated Disease View
  • Integrated Nervous System Connectivity View
  • Integrated Podcasts View
  • Integrated Software View
  • Integrated Video View
  • Integrated Jobs
  • Integrated Blogs
For a listing of the Federated Databases see, http://neuinfo.org/mynif/databaseList.php or refer to the "Resources Listed by NIF Data Federation" table below.
isted by NIF Data Federation" table below.
ExampleImageData Federation.PNG  +
GrantCategory:HHSN27120080035C   +
Has default formThis property is a special property in this wiki.Resource  +
Has rolePortal  +, and Service resource  +
Idnlx_81822  +
Is part ofResource:Neuroscience Information Framework  +
KeywordsSemantics  +, Neuroscience  +, Animal  +, Annotation  +, Antibody  +, Biospecimen  +, Brain Activation Foci  +, Clinical Trial  +, Connectivity  +, Data set  +, Disease  +, Drug  +, Grant  +, Image  +, Microarray  +, Model  +, Multimedia  +, Negative Data  +, Pathway  +, People resource  +, Plasmid  +, Catalog  +, Software resource  +, Brain Region  +, Cell  +, Gene  +, Molecule  +, Multi-Level  +, Nervous System  +, and Nervous System Function  +
LabelResource:NIF Data Federation  +
ListedbyResource:3DVC  +
ModifiedDate23 October 2014  +
OldURLhttp://neuinfo.org/nif/nifgwt.html?query=%2A  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
Supporting AgencyNational Institute on Drug Abuse  +, U.S. Department of Health and Human Services  +, and Resource:NIH Blueprint for Neuroscience Research  +
SynonymNeuroscience Information Framework Data Federation  +
UsedbyResource:SciCrunch  +, Resource:Monarch Initiative  +, and Resource:dkNET  +