arrow

From NeuroLex

Jump to: navigation, search



Resource:Adenylate Uridylate-rich-Rich Element-Containing mRNA Database

Name: Resource:Adenylate Uridylate-rich-Rich Element-Containing mRNA Database
Description: Database that contains the complete entries of human ARE-containing full-length mRNAs.
ARED is further clustered into five groups depending on the number of motifs in the ARE stretch. Groups 1-4 contain five, four, three and two pentameric (AUUUA) repeats, respectively, while Group 5 contains only one repeat within the 13-bp pattern. Clustering was performed in such a way that, for example, Group 1 included not only exact five or more continuous ARE pentamers but also those with 10% ambiguity, so that a stretch of NUUUAUUUAUUUAUUUAUUUN would fall in this category. This process was verified by a phylogenic tree relationship using Clustal-W alignment of ARE stretches and their variations. As could be expected, this analysis showed that the lower the number of ARE motifs in a group, the higher the number of sequences that were included, and apparently the more functionally diverse the corresponding ARE-genes.
Other Name(s): Adenylate Uridylate-Rich Element-mRNA database
Abbreviation: ARED
Parent Organization: King Faisal Specialist Hospital & Research Center, The Biomolecular Research Program
Resource Type(s): Database
Resource: Resource
URL: http://brp.kfshrc.edu.sa/ARED
Old URL(s): http://rc.kfshrc.edu.sa/ared/
*Id: nif-0000-02566
Keywords: adenylate uridylate-rich element-mrna, are-gene, mRNA, rna sequence database
Organism: Human
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

This resource will be curated within 7 days.

For Resource Owners:
After the resource is curated, you may create a sitemap, which will help keep your registry description up-to-date and inform search engines about your resource.

Note: For a new resource, the website's URL must first be verified by a NIF curator before you may proceed.

Learn more about what NIF can do for your resource.
Proudly proclaim your inclusion in NIF by displaying the "Registered with NIF" button on your site. Please login to create the sitemap. (top right)


Notes

This page uses this default form:Resource

Contributors

Aarnaud, Ccdbuser, Nifbot2, Zaidaziz



bookmark

*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:Adenylate Uridylate-rich-Rich Element-Containing mRNA DatabaseRDF feed
AbbrevARED  +
CurationStatusuncurated  +
DefiningCitationhttp://brp.kfshrc.edu.sa/ARED  +
DefinitionDatabase that contains the complete entrie Database that contains the complete entries of human ARE-containing full-length mRNAs.
ARED is further clustered into five groups depending on the number of motifs in the ARE stretch. Groups 1-4 contain five, four, three and two pentameric (AUUUA) repeats, respectively, while Group 5 contains only one repeat within the 13-bp pattern. Clustering was performed in such a way that, for example, Group 1 included not only exact five or more continuous ARE pentamers but also those with 10% ambiguity, so that a stretch of NUUUAUUUAUUUAUUUAUUUN would fall in this category. This process was verified by a phylogenic tree relationship using Clustal-W alignment of ARE stretches and their variations. As could be expected, this analysis showed that the lower the number of ARE motifs in a group, the higher the number of sequences that were included, and apparently the more functionally diverse the corresponding ARE-genes.
diverse the corresponding ARE-genes.
EditorialNoteThis resource is down 4/30/2014.
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnif-0000-02566  +
Is part ofKing Faisal Specialist Hospital & Research Center  +, and The Biomolecular Research Program  +
KeywordsAdenylate uridylate-rich element-mrna  +, Are-gene  +, MRNA  +, and Rna sequence database  +
LabelResource:Adenylate Uridylate-rich-Rich Element-Containing mRNA Database  +
ModifiedDate25 July 2014  +
OldURLhttp://rc.kfshrc.edu.sa/ared/  +
Page has default formThis property is a special property in this wiki.Resource  +
SpeciesHuman  +
SuperCategoryResource  +
SynonymAdenylate Uridylate-Rich Element-mRNA database  +