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Resource:Affinity Databases for Protein-Ligand Complexes

Name: Resource:Affinity Databases for Protein-Ligand Complexes
Description: A database that contains affinity data for protein-ligand complexes of the Protein Data Bank (PDB) in order to provide direct and free access to the experimental affinity of a given complex structure. As of Friday, April 22nd, 2011, AffinDB contains 748 affinity values covering 474 different PDB complexes. More than one affinity value may be associated with a single PDB complex, which is most frequently due to multiple references reporting affinity data for the same complex. Database users are encouraged to notify the administrators about any valuable publication which reports affinity data for PDB complexes.

Affinity data are exclusively obtained from the scientific literature. Both 'primary' and 'secondary' references are taken into account:

  • A primary reference is a paper describing the original work of affinity measurement for the corresponding protein-ligand complex.
  • A secondary reference is any other paper that reports an affinity value for a PDB complex; common examples are publications which include compilations of affinity data for a specific purpose.

AffinDB provides access to data in three different forms:
I. Summary information for PDB entry
II. Affinity information window

III. Tabular reports
Other Name(s): AffinDB, AffinDB: Affinity Databases for Protein-Ligand Complexes
Parent Organization: Philipps-University Marburg; Marburg; Germany
Related to: Resource:Protein Data Bank Site
Resource Type(s): Database
Keywords: metabolic pathway, signaling pathway, protein-ligand complex, protein-protein interaction
Resource: Resource
URL: http://www.agklebe.de/affinity
PMID: PMID 16381925
Id: nif-0000-02536
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Facts about Resource:Affinity Databases for Protein-Ligand ComplexesRDF feed
CurationStatusuncurated  +
DefiningCitationhttp://www.agklebe.de/affinity  +
DefinitionA database that contains affinity data for A database that contains affinity data for protein-ligand complexes of the Protein Data Bank (PDB) in order to provide direct and free access to the experimental affinity of a given complex structure. As of Friday, April 22nd, 2011, AffinDB contains 748 affinity values covering 474 different PDB complexes. More than one affinity value may be associated with a single PDB complex, which is most frequently due to multiple references reporting affinity data for the same complex. Database users are encouraged to notify the administrators about any valuable publication which reports affinity data for PDB complexes.

Affinity data are exclusively obtained from the scientific literature. Both 'primary' and 'secondary' references are taken into account:

  • A primary reference is a paper describing the original work of affinity measurement for the corresponding protein-ligand complex.
  • A secondary reference is any other paper that reports an affinity value for a PDB complex; common examples are publications which include compilations of affinity data for a specific purpose.

AffinDB provides access to data in three different forms:
I. Summary information for PDB entry
II. Affinity information window
III. Tabular reports
n window

III. Tabular reports
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnif-0000-02536  +
Is part ofPhilipps-University Marburg; Marburg; Germany  +
KeywordsMetabolic pathway  +, Signaling pathway  +, Protein-ligand complex  +, and Protein-protein interaction  +
LabelResource:Affinity Databases for Protein-Ligand Complexes  +
ModifiedDate13 February 2013  +
PMID16381925  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:Protein Data Bank Site  +
SuperCategoryResource  +
SynonymAffinDB  +, and AffinDB: Affinity Databases for Protein-Ligand Complexes  +