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Resource:AgBase

Name: Resource:AgBase
Description: A curated, open-source, web-accessible resource for functional analysis of agricultural plant and animal gene products. Our long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models. AgBase provides tools designed to assist with the analysis of proteomics data and tools to evaluate experimental datasets using the GO. Additional tools for sequence analysis are also provided.

We use controlled vocabularies developed by the Gene Ontology (GO) Consortium to describe molecular function, biological process, and cellular component for genes and gene products in agricultural species.

AgBase will also accept annotations from any interested party in the research communities. AgBase develops freely available tools for functional analysis, including tools for using GO. We appreciate any and all questions, comments, and suggestions.

AgBase uses the NCBI Blast program for searches for similar sequences. And the Taxonomy Browser allows users to find the NCBI defined taxon ID for or taxon name for different organisms.
Abbreviation: AgBase
Parent Organization: Mississippi State University; Mississippi; USA
Supporting Agency: Mississippi State University; Mississippi; USA, National Research Initiative of the USDA Cooperative State Research Education and Extension Service, NIGMS
Grant: MISV-329140, 07111084
Resource Type(s): Database
Resource: Resource
URL: http://www.agbase.msstate.edu/
Id: nif-0000-02537
PMID: PMID 21075795
Keywords: gene ontology, agricultural species, biological process, cellular component for genes, molecular function, protein identification, animals, plants, microbes, parasites
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:AgBase

Resource:IntAct

Parts of Resource:AgBase

Curation status: Curated

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Facts about Resource:AgBaseRDF feed
AbbrevAgBase  +
CurationStatusuncurated  +
DefiningCitationhttp://www.agbase.msstate.edu/  +
DefinitionA curated, open-source, web-accessible res A curated, open-source, web-accessible resource for functional analysis of agricultural plant and animal gene products. Our long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models. AgBase provides tools designed to assist with the analysis of proteomics data and tools to evaluate experimental datasets using the GO. Additional tools for sequence analysis are also provided.

We use controlled vocabularies developed by the Gene Ontology (GO) Consortium to describe molecular function, biological process, and cellular component for genes and gene products in agricultural species.

AgBase will also accept annotations from any interested party in the research communities. AgBase develops freely available tools for functional analysis, including tools for using GO. We appreciate any and all questions, comments, and suggestions.

AgBase uses the NCBI Blast program for searches for similar sequences. And the Taxonomy Browser allows users to find the NCBI defined taxon ID for or taxon name for different organisms.
for or taxon name for different organisms.
GrantCategory:MISV-329140   +, and Category:07111084   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnif-0000-02537  +
Is part ofMississippi State University; Mississippi; USA  +
KeywordsGene ontology  +, Agricultural species  +, Biological process  +, Cellular component for genes  +, Molecular function  +, Protein identification  +, Animals  +, Plants  +, Microbes  +, and Parasites  +
LabelResource:AgBase  +
ModifiedDate28 March 2014  +
PMID21075795  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
Supporting AgencyMississippi State University; Mississippi; USA  +, National Research Initiative of the USDA Cooperative State Research Education and Extension Service  +, and National Institute of General Medical Sciences  +