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Resource:BioGRID

Name: Resource:BioGRID
Description: A curated protein-protein and genetic interaction repository of raw protein and genetic interactions from major model organism species, with data compiled through comprehensive curation efforts. The current version searches over 39,991 publications containing over 681,783 interactions (May 2013) and contributions are welcome.

Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway.

Current curation drives are focused on particular areas of biology to enable insights into conserved networks and pathways that are relevant to human health. The BioGRID 3.0 web interface contains new search and display features that enable rapid queries across multiple data types and sources. BioGRID provides interaction data to several model organism databases, resources such as Entrez-Gene, SGD, TAIR, FlyBase and other interaction meta-databases. The entire BioGRID 3.0 data collection may be downloaded in multiple file formats, including IMEx compatible PSI MI XML. For developers, BioGRID interactions are also available via a REST based Web Service and Cytoscape plugin.

Tools, software, and resources either written by the BioGRID team or a third party are available that can help you make use of BioGRID interaction data. All tools and resources are released WITHOUT ANY WARRANTY and are free to both academic and commercial entities for research purposes only.
Other Name(s): Biological General Repository for Interaction Datasets
Parent Organization: Princeton University; New Jersey; USA, University of Edinburgh; Scotland; United Kingdom, Mount Sinai Hospital; Ontario; Canada, University of Montreal; Montreal; Canada
Supporting Agency: NIH, BBSRC, Canadian Institutes of Health Research
Related to: Resource:NIF Data Federation, Resource:Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization, Resource:DataCite, Resource:Monarch Initiative
Resource Type(s): Database, Software resource, Data repository
Keywords: budding yeast, fission yeast, protein, gene, protein interaction, genetic interaction, model organism, interaction, dataset, Caenorhabditis elegans, Drosophila melanogaster, Mus musculus, Homo sapiens, Gene annotation, phenotype, orthologous interaction, yeast, cellular interaction network, Physical Interaction, Protein-peptide, Protein-RNA, Protein-protein interaction, Genetics, publication, raw protein, genetic interaction, Web service, interaction, pathway, network
Grant: R01 RR024031
Abbreviation: BioGRID
Resource: Resource
URL: http://www.thebiogrid.org/
PMID: PMID 21071413, 16381927, 12620108
Related application: Research
Availability: Public, The community can contribute to this resource
Id: nif-0000-00432
Organism: Saccharomyces cerevisiae, Schizosaccharomyces pombe, Arabidopsis thaliana, Metazoa, Human, Other
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:BioGRID

Resource:APID: Agile Protein Interaction DataAnalyzer, Resource:FlyMine, Resource:IMEx - The International Molecular Exchange Consortium, Resource:Integrated Manually Extracted Annotation, Resource:Interaction Reference Index, Resource:PSICQUIC Registry, Resource:Pathway Commons

Curation status: Curated

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| Twitter Handle: @biogrid



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Facts about Resource:BioGRIDRDF feed
AbbrevBioGRID  +
AvailabilityPublic  +, and The community can contribute to this resource  +
CurationStatuscurated  +
DefiningCitationhttp://www.thebiogrid.org/  +
DefinitionA curated protein-protein and genetic inte A curated protein-protein and genetic interaction repository of raw protein and genetic interactions from major model organism species, with data compiled through comprehensive curation efforts. The current version searches over 39,991 publications containing over 681,783 interactions (May 2013) and contributions are welcome.

Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway.

Current curation drives are focused on particular areas of biology to enable insights into conserved networks and pathways that are relevant to human health. The BioGRID 3.0 web interface contains new search and display features that enable rapid queries across multiple data types and sources. BioGRID provides interaction data to several model organism databases, resources such as Entrez-Gene, SGD, TAIR, FlyBase and other interaction meta-databases. The entire BioGRID 3.0 data collection may be downloaded in multiple file formats, including IMEx compatible PSI MI XML. For developers, BioGRID interactions are also available via a REST based Web Service and Cytoscape plugin.

Tools, software, and resources either written by the BioGRID team or a third party are available that can help you make use of BioGRID interaction data. All tools and resources are released WITHOUT ANY WARRANTY and are free to both academic and commercial entities for research purposes only.
rcial entities for research purposes only.
ExampleImageBioGRID.PNG  +
GrantCategory:R01 RR024031   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +, Software resource  +, and Data repository  +
Idnif-0000-00432  +
Is part ofPrinceton University; New Jersey; USA  +, University of Edinburgh; Scotland; United Kingdom  +, Mount Sinai Hospital; Ontario; Canada  +, and University of Montreal; Montreal; Canada  +
KeywordsBudding yeast  +, Fission yeast  +, Protein  +, Gene  +, Protein interaction  +, Genetic interaction  +, Model organism  +, Interaction  +, Dataset  +, Caenorhabditis elegans  +, Drosophila melanogaster  +, Mus musculus  +, Homo sapiens  +, Gene annotation  +, Phenotype  +, Orthologous interaction  +, Yeast  +, Cellular interaction network  +, Physical Interaction  +, Protein-peptide  +, Protein-RNA  +, Protein-protein interaction  +, Genetics  +, Publication  +, Raw protein  +, Web service  +, Pathway  +, and Network  +
LabelResource:BioGRID  +
ModifiedDate7 February 2014  +
PMID21071413, 16381927, 12620108  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:NIF Data Federation  +, Resource:Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization  +, Resource:DataCite  +, and Resource:Monarch Initiative  +
Related applicationResearch  +
SpeciesSaccharomyces cerevisiae  +, Schizosaccharomyces pombe  +, Arabidopsis thaliana  +, Metazoa  +, Human  +, and Other  +
SuperCategoryResource  +
Supporting AgencyNIH  +, BBSRC  +, and Canadian Institutes of Health Research  +
SynonymBiological General Repository for Interaction Datasets  +
Twitterbiogrid  +