arrow

From NeuroLex

Jump to: navigation, search



Resource:BioGRID

Name: Resource:BioGRID
Description: A curated protein-protein and genetic interaction repository of raw protein and genetic interactions from major model organism species, with data compiled through comprehensive curation efforts. The current version searches over 41,000 publications containing over 720,000 interactions (June 2014) and contributions are welcome.

Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway.

Current curation drives are focused on particular areas of biology to enable insights into conserved networks and pathways that are relevant to human health. It provides interaction data to several model organism databases, resources such as Entrez-Gene, SGD, TAIR, FlyBase and other interaction meta-databases. The entire BioGRID 3.0 data collection may be downloaded in multiple file formats, including IMEx compatible PSI MI XML. For developers, BioGRID interactions are also available via a REST based Web Service and Cytoscape plugin.[1]
Other Name(s): Biological General Repository for Interaction Datasets
Abbreviation: BioGRID
Parent Organization: Princeton University; New Jersey; USA, University of Edinburgh; Scotland; United Kingdom, Mount Sinai Hospital; Ontario; Canada, University of Montreal; Montreal; Canada
Supporting Agency: NIH, BBSRC, Canadian Institutes of Health Research
Grant: R01 RR024031
Resource Type(s): Database, Software resource, Data repository
Resource: Resource
URL: http://www.thebiogrid.org/
Id: nif-0000-00432
PMID: PMID 23203989, 21071413, 16381927, 12620108
Related application: Research
Related to: Resource:NIF Data Federation, Resource:Cytoscape, Resource:DataCite, Resource:Monarch Initiative, Resource:OMICtools, Resource:re3data.org, Resource:PSI-MI
Availability: Public, Free, Only for research, The community can contribute to this resource
Address: Canada
Keywords: budding yeast, fission yeast, protein, gene, protein interaction, genetic interaction, model organism, interaction, dataset, Gene annotation, phenotype, orthologous interaction, yeast, cellular interaction network, Physical interaction, Protein-peptide, Protein-RNA, Protein-protein interaction, Genetics, publication, raw protein, genetic interaction, Web service, pathway, network, Biology, Gene mapping, Statistics
Organism: Saccharomyces cerevisiae, Schizosaccharomyces pombe, Arabidopsis thaliana, Metazoa, Human, Mouse, Caenorhabditis elegans, Drosophila melanogaster, Other
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:BioGRID

Resource:APID: Agile Protein Interaction DataAnalyzer, Resource:ConsensusPathDB, Resource:FlyMine, Resource:IMEx - The International Molecular Exchange Consortium, Resource:Integrated Manually Extracted Annotation, Resource:Integrated Molecular Interaction Database, Resource:Interaction Reference Index, Resource:PSICQUIC Registry, Resource:Pathway Commons, Resource:TissueNet - The Database of Human Tissue Protein-Protein Interactions

Curation status: Uncurated

This resource will be curated within 7 days.

For Resource Owners:
After the resource is curated, you may create a sitemap, which will help keep your registry description up-to-date and inform search engines about your resource.

Note: For a new resource, the website's URL must first be verified by a NIF curator before you may proceed.

Learn more about what NIF can do for your resource.
Proudly proclaim your inclusion in NIF by displaying the "Registered with NIF" button on your site. Please login to create the sitemap. (top right)

References

  1. Chatr-Aryamontri A et al. (2013) The BioGRID interaction database: 2013 update. Nucleic Acids Res 41: D816-23 PubMed

Notes

This page uses this default form:Resource

Xref: OMICS_01901

News

| Twitter Handle: @biogrid



bookmark
Facts about Resource:BioGRIDRDF feed
AbbrevBioGRID  +
AddressCanada  +
AvailabilityPublic  +, Free  +, Only for research  +, and The community can contribute to this resource  +
CommentStart date: 2003

Type: Disciplinary

Deposit: Accepting data for deposit - http://wiki.thebiogrid.org/doku.php/contribute#send_us_your_interaction_data
CurationStatusuncurated  +
DefiningCitationhttp://www.thebiogrid.org/  +
DefinitionA curated protein-protein and genetic inte A curated protein-protein and genetic interaction repository of raw protein and genetic interactions from major model organism species, with data compiled through comprehensive curation efforts. The current version searches over 41,000 publications containing over 720,000 interactions (June 2014) and contributions are welcome.

Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway.

Current curation drives are focused on particular areas of biology to enable insights into conserved networks and pathways that are relevant to human health. It provides interaction data to several model organism databases, resources such as Entrez-Gene, SGD, TAIR, FlyBase and other interaction meta-databases. The entire BioGRID 3.0 data collection may be downloaded in multiple file formats, including IMEx compatible PSI MI XML. For developers, BioGRID interactions are also available via a REST based Web Service and Cytoscape plugin.
ST based Web Service and Cytoscape plugin.
ExampleImageBioGRID.PNG  +
GrantCategory:R01 RR024031   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +, Software resource  +, and Data repository  +
Idnif-0000-00432  +
Is part ofPrinceton University; New Jersey; USA  +, University of Edinburgh; Scotland; United Kingdom  +, Mount Sinai Hospital; Ontario; Canada  +, and University of Montreal; Quebec; Canada  +
KeywordsBudding yeast  +, Fission yeast  +, Protein  +, Gene  +, Protein interaction  +, Genetic interaction  +, Model organism  +, Interaction  +, Data set  +, Gene annotation  +, Phenotype  +, Orthologous interaction  +, Yeast  +, Cellular interaction network  +, Physical interaction  +, Protein-peptide  +, Protein-RNA  +, Protein-protein interaction  +, Genetics  +, Publication  +, Raw protein  +, Web service  +, Pathway  +, Network  +, Biology  +, Gene mapping  +, and Statistics  +
LabelResource:BioGRID  +
ModifiedDate17 July 2014  +
PMID23203989, 21071413, 16381927, 12620108  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:NIF Data Federation  +, Resource:Cytoscape  +, Resource:DataCite  +, Resource:Monarch Initiative  +, Resource:OMICtools  +, Resource:re3data.org  +, and Resource:PSI-MI  +
Related applicationResearch  +
SpeciesSaccharomyces cerevisiae  +, Schizosaccharomyces pombe  +, Arabidopsis thaliana  +, Metazoa  +, Human  +, Mouse  +, Caenorhabditis elegans  +, Drosophila melanogaster  +, and Other  +
SuperCategoryResource  +
Supporting AgencyNational Institutes of Health  +, Biotechnology and Biological Sciences Research Council  +, and Canadian Institutes of Health Research  +
SynonymBiological General Repository for Interaction Datasets  +
Twitterbiogrid  +