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Resource:BioGRID
| Name: | Resource:BioGRID |
| Description: | A curated protein-protein and genetic interaction repository of raw protein and genetic interactions from major model organism species, with data compiled through comprehensive curation efforts. The current version searches over 38,590 publications containing over 648,491 interactions and contributions are welcome.
Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway. Current curation drives are focused on particular areas of biology to enable insights into conserved networks and pathways that are relevant to human health. The BioGRID 3.0 web interface contains new search and display features that enable rapid queries across multiple data types and sources. BioGRID provides interaction data to several model organism databases, resources such as Entrez-Gene, SGD, TAIR, FlyBase and other interaction meta-databases. The entire BioGRID 3.0 data collection may be downloaded in multiple file formats, including IMEx compatible PSI MI XML. For developers, BioGRID interactions are also available via a REST based Web Service and Cytoscape plugin. Tools, software, and resources either written by the BioGRID team or a third party are available that can help you make use of BioGRID interaction data. All tools and resources are released WITHOUT ANY WARRANTY and are free to both academic and commercial entities for research purposes only. |
| Other Name(s): | Biological General Repository for Interaction Datasets |
| Parent Organization: | Princeton University; New Jersey; USA, University of Edinburgh; Scotland; United Kingdom, Mount Sinai Hospital; Ontario; Canada, University of Montreal; Montreal; Canada |
| Supporting Agency: | National Institutes of Health, BBSRC, Canadian Institutes of Health Research |
| Related to: | Resource:NIF Data Federation, Resource:Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization, Resource:DataCite |
| Resource Type(s): | Database, Web service, Software resource, Data repository |
| Keywords: | budding yeast, fission yeast, protein, gene, protein interaction, genetic interaction, model organism, interaction data, dataset, Caenorhabditis elegans, Drosophila melanogaster, Mus musculus, Homo sapiens, Gene annotation, phenotype, orthologous interaction, yeast, cellular interaction network, Physical Interaction, Protein-peptide, Protein-RNA, Protein-protein interaction, Genetics, publication, raw protein, genetic interaction |
| Grant: | R01 RR024031 |
| Abbreviation: | BioGRID |
| Resource: | Resource |
| URL: | http://www.thebiogrid.org/ |
| PMID: | PMID 21071413, 16381927, 12620108 |
| Related application: | Research |
| Availability: | Public |
| Id: | nif-0000-00432 |
| Organism: | Saccharomyces cerevisiae, Schizosaccharomyces pombe, Arabidopsis thaliana, Metazoa, Human, etc |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Categories related to Resource:BioGRID
Resource:APID: Agile Protein Interaction DataAnalyzer, Resource:FlyMine, Resource:IMEx - The International Molecular Exchange Consortium, Resource:PSICQUIC Registry, Resource:Pathway Commons
Curation status: Curated
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Notes
This page uses this default form:Resource
News
| Twitter Handle: @biogrid
| Abbrev | BioGRID + |
| Availability | Public + |
| CurationStatus | curated + |
| DefiningCitation | http://www.thebiogrid.org/ + |
| Definition | A curated protein-protein and genetic inte … A curated protein-protein and genetic interaction repository of raw protein and genetic interactions from major model organism species, with data compiled through comprehensive curation efforts. The current version searches over 38,590 publications containing over 648,491 interactions and contributions are welcome.
Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway. Current curation drives are focused on particular areas of biology to enable insights into conserved networks and pathways that are relevant to human health. The BioGRID 3.0 web interface contains new search and display features that enable rapid queries across multiple data types and sources. BioGRID provides interaction data to several model organism databases, resources such as Entrez-Gene, SGD, TAIR, FlyBase and other interaction meta-databases. The entire BioGRID 3.0 data collection may be downloaded in multiple file formats, including IMEx compatible PSI MI XML. For developers, BioGRID interactions are also available via a REST based Web Service and Cytoscape plugin. Tools, software, and resources either written by the BioGRID team or a third party are available that can help you make use of BioGRID interaction data. All tools and resources are released WITHOUT ANY WARRANTY and are free to both academic and commercial entities for research purposes only. rcial entities for research purposes only. |
| ExampleImage |  + |
| Grant | Category:R01 RR024031 + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Database +, Web service +, Software resource +, and Data repository + |
| Id | nif-0000-00432 + |
| Is part of | Princeton University; New Jersey; USA +, University of Edinburgh; Scotland; United Kingdom +, Mount Sinai Hospital; Ontario; Canada +, and University of Montreal; Montreal; Canada + |
| Keywords | Budding yeast +, Fission yeast +, Protein +, Gene +, Protein interaction +, Genetic interaction +, Model organism +, Interaction data +, Dataset +, Caenorhabditis elegans +, Drosophila melanogaster +, Mus musculus +, Homo sapiens +, Gene annotation +, Phenotype +, Orthologous interaction +, Yeast +, Cellular interaction network +, Physical Interaction +, Protein-peptide +, Protein-RNA +, Protein-protein interaction +, Genetics +, Publication +, and Raw protein + |
| Label | Resource:BioGRID + |
| ModifiedDate | 5 March 2013 + |
| PMID | 21071413, 16381927, 12620108 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| RelatedTo | Resource:NIF Data Federation +, Resource:Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization +, and Resource:DataCite + |
| Related application | Research + |
| Species | Saccharomyces cerevisiae +, Schizosaccharomyces pombe +, Arabidopsis thaliana +, Metazoa +, Human +, and Etc + |
| SuperCategory | Resource + |
| Supporting Agency | National Institutes of Health +, BBSRC +, and Canadian Institutes of Health Research + |
| Synonym | Biological General Repository for Interaction Datasets + |
| biogrid + |
