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Resource:BioSample Database at EBI
| Name: | Resource:BioSample Database at EBI |
| Description: | Database that aggregates sample information for reference samples e.g. Coriell Cell lines and samples for which data exist in one of the EBI's assay databases such as ArrayExpress, the European Nucleotide archive, or Pride. It provides links to assays for specific samples, and accepts direct submissions of samples. Physical samples may also be available for further study from suppliers.
The goals of the BioSample Database include: (i) recording and linking of sample information consistently within EBI databases such as ENA, ArrayExpress and PRIDE; (ii) minimizing data entry efforts for EBI database submitters by enabling submitting sample descriptions once and referencing them later in data submissions to assay databases and (iii) supporting cross database queries by sample characteristics. The database includes a growing set of reference samples, such as cell lines, which are repeatedly used in experiments and can be easily referenced from any database by their accession numbers. Accession numbers for the reference samples will be exchanged with a similar database at NCBI. The samples in the database can be queried by their attributes, such as sample types, disease names or sample providers. A simple tab-delimited format facilitates submissions of sample information to the database, initially via email to biosamples (at) ebi.ac.uk. Current data sources:
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| Other Name(s): | BioSample Database at the EBI, BioSample Database, BioSD - BioSample Database, BioSD at EBI, BioSamples database, BioSamples Database at EBI, EBI BioSample Database |
| Parent Organization: | Resource:European Bioinformatics Institute |
| Supporting Agency: | Resource:European Molecular Biology Laboratory; Heidelberg; Germany, European Commission, (CAGEKID, ENGAGE from FP7 program) |
| Related to: | Resource:NCBI BioSample, Resource:European Nucleotide Archive, Resource:PRIDE, Resource:ArrayExpress Archive, Resource:ENCODE: Encyclopedia of DNA Elements, Resource:Coriell Institute for Medical Research, Resource:1000 Genomes: A Deep Catalog of Human Genetic Variation, Resource:International HapMap Project, Resource:International Mouse Strain Resource |
| Resource Type(s): | Database, Biomaterial supply resource, Cell repository, Biospecimen repository |
| Keywords: | Cell line, Cell, Nucleotide, Sequencing, Proteomics, Peptide, Protein, Genomics, Gene expression, Biological sample, Molecular, Gold standard or authority, sequence, structure, Cell line, Topical portal, aggregator |
| Grant: | HEALTH-F4-2010-241669, HEALTH-F4-2007-201413 |
| Abbreviation: | BioSD |
| Resource: | Resource |
| URL: | http://www.ebi.ac.uk/biosamples/ |
| PMID: | PMID 22096232 |
| Publication link: | http://nar.oxfordjournals.org/content/40/D1/D64.abstract?ijkey=374e1923695afc02d016814b186e42cd500c3cc5&keytype2=tf_ipsecsha |
| Related application: | Research |
| Availability: | The community can contribute to this resource. |
| Id: | nlx_143930 |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Curation status: Curated
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References
- ↑ Gostev M et al. (2012) The BioSample Database (BioSD) at the European Bioinformatics Institute. Nucleic Acids Res 40: D64-70 PubMed
Notes
This page uses this default form:Resource
| Abbrev | BioSD + |
| Availability | The community can contribute to this resource. + |
| Comment | Sample type: Cell line, etc. |
| CurationStatus | curated + |
| DefiningCitation | http://www.ebi.ac.uk/biosamples/ + |
| Definition | Database that aggregates sample informatio … Database that aggregates sample information for reference samples e.g. Coriell Cell lines and samples for which data exist in one of the EBI's assay databases such as ArrayExpress, the European Nucleotide archive, or Pride. It provides links to assays for specific samples, and accepts direct submissions of samples. Physical samples may also be available for further study from suppliers.
The goals of the BioSample Database include: (i) recording and linking of sample information consistently within EBI databases such as ENA, ArrayExpress and PRIDE; (ii) minimizing data entry efforts for EBI database submitters by enabling submitting sample descriptions once and referencing them later in data submissions to assay databases and (iii) supporting cross database queries by sample characteristics. The database includes a growing set of reference samples, such as cell lines, which are repeatedly used in experiments and can be easily referenced from any database by their accession numbers. Accession numbers for the reference samples will be exchanged with a similar database at NCBI. The samples in the database can be queried by their attributes, such as sample types, disease names or sample providers. A simple tab-delimited format facilitates submissions of sample information to the database, initially via email to biosamples (at) ebi.ac.uk. Current data sources:
|
| ExampleImage |  + |
| Grant | Category:HEALTH-F4-2010-241669 +, and Category:HEALTH-F4-2007-201413 + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Database +, Biomaterial supply resource +, Cell repository +, and Biospecimen repository + |
| Id | nlx_143930 + |
| Is part of | Resource:European Bioinformatics Institute + |
| Keywords | Cell line +, Cell +, Nucleotide +, Sequencing +, Proteomics +, Peptide +, Protein +, Genomics +, Gene expression +, Biological sample +, Molecular +, Gold standard or authority +, Sequence +, Structure +, Topical portal +, and Aggregator + |
| Label | Resource:BioSample Database at EBI + |
| ModifiedDate | 23 May 2013 + |
| PMID | 22096232 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| PublicationLink | http://nar.oxfordjournals.org/content/40/D1/D64.abstract?ijkey=374e1923695afc02d016814b186e42cd500c3cc5&keytype2=tf_ipsecsha + |
| RelatedTo | Resource:NCBI BioSample +, Resource:European Nucleotide Archive +, Resource:PRIDE +, Resource:ArrayExpress Archive +, Resource:ENCODE: Encyclopedia of DNA Elements +, Resource:Coriell Institute for Medical Research +, Resource:1000 Genomes: A Deep Catalog of Human Genetic Variation +, Resource:International HapMap Project +, and Resource:International Mouse Strain Resource + |
| Related application | Research + |
| SuperCategory | Resource + |
| Supporting Agency | Resource:European Molecular Biology Laboratory; Heidelberg; Germany +, European Commission +, (CAGEKID +, and ENGAGE from FP7 program) + |
| Synonym | BioSample Database at the EBI +, BioSample Database +, BioSD - BioSample Database +, BioSD at EBI +, BioSamples database +, BioSamples Database at EBI +, and EBI BioSample Database + |
