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Resource:Bioconductor
| Name: | Resource:Bioconductor |
| Description: | Open source, open development software project providing tools for the analysis and comprehension of high-throughput genomic data. It is based primarily on the R programming language. It has two releases each year, 610 software packages, and an active user community. Bioconductor is also available as an Amazon Machine Image (AMI).
There is also a development version, to which new features and packages are added prior to incorporation in the release. A large number of meta-data packages provide pathway, organism, microarray and other annotations. Bioconductor packages the GO ontology into our semi-annual release, with software tools to: query; join with diverse additional gene, microarray, and sequence annotations; incorporate GO into annotation, differential expression, and gene set enrichment work flows; and visualize. The broad goals of the Bioconductor project are:
|
| Other Name(s): | Biobonductor - Open Source Software for Bioinformatics |
| Parent Organization: | Resource:Fred Hutchinson Cancer Research Center |
| Supporting Agency: | NIH, Resource:Catt Family Foundation, Resource:Dana-Farber Cancer Institute |
| Related to: | Resource:Gene Ontology Tools, Resource:GO |
| Resource Type(s): | Data analysis software |
| Keywords: | analysis, biological, development, genomic, graphical, metadata, microarray, software, statistical, variant, annotation, High throughput assay, Sequence data, Sequence, Flow, Gene, term enrichment, text mining, Genetic, ontology or annotation browser, ontology or annotation search engine, ontology or annotation visualization, database or data warehouse, software library, statistical analysis, other analysis, Flexible integration of GO into statistical analysis and comprehension of high-throughput genetic data, browser, search engine, visualization, high-throughput, genetics |
| Grant: | #1R33 HG002708 |
| Abbreviation: | Bioconductor |
| Resource: | Resource |
| URL: | http://www.bioconductor.org/ |
| PMID: | PMID 15461798 |
| Publication link: | http://genomebiology.com/content/pdf/gb-2004-5-10-r80.pdf |
| Availability: | Open source - Free for academic use |
| Id: | nif-0000-10445 |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Parts of Resource:Bioconductor
Curation status: Uncurated
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News
| Twitter Handle: @Bioconductor
| Abbrev | Bioconductor + |
| Availability | Open source - Free for academic use. +, and The community can contribute to this resource. + |
| Comment | GO data updates: every three months (or more frequently) / org-id: bioconductor |
| CurationStatus | curated + |
| DefiningCitation | http://www.bioconductor.org/ + |
| Definition | Open source, open development software pro … Open source, open development software project providing tools for the analysis and comprehension of high-throughput genomic data. It is based primarily on the R programming language. It has two releases each year, 610 software packages, and an active user community. Bioconductor is also available as an Amazon Machine Image (AMI).
There is also a development version, to which new features and packages are added prior to incorporation in the release. A large number of meta-data packages provide pathway, organism, microarray and other annotations. Bioconductor packages the GO ontology into our semi-annual release, with software tools to: query; join with diverse additional gene, microarray, and sequence annotations; incorporate GO into annotation, differential expression, and gene set enrichment work flows; and visualize. The broad goals of the Bioconductor project are:
|
| ExampleImage |  + |
| Grant | Category:#1R33 HG002708 + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Data analysis software + |
| Id | nif-0000-10445 + |
| Is part of | Resource:Fred Hutchinson Cancer Research Center + |
| Keywords | Analysis +, Biological +, Development +, Genomic +, Graphical +, Metadata +, Microarray +, Software resource +, Statistical +, Variant +, Annotation +, High throughput assay +, Sequence data +, Sequence +, Flow +, Gene +, Term enrichment +, Text mining +, Genetic +, Ontology or annotation browser +, Ontology or annotation search engine +, Ontology or annotation visualization +, Database or data warehouse +, Software library +, Statistical analysis +, Other analysis +, Flexible integration of GO into statistical analysis and comprehension of high-throughput genetic data +, Browser +, Search engine +, Visualization +, High-throughput +, and Genetics + |
| Label | Resource:Bioconductor + |
| ModifiedDate | 12 April 2013 + |
| PMID | 15461798 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| PublicationLink | http://genomebiology.com/content/pdf/gb-2004-5-10-r80.pdf + |
| RelatedTo | Resource:Gene Ontology Tools +, and Resource:GO + |
| SuperCategory | Resource + |
| Supporting Agency | National Institutes of Health +, Resource:Catt Family Foundation +, and Resource:Dana-Farber Cancer Institute + |
| Synonym | Biobonductor - Open Source Software for Bioinformatics + |
| Bioconductor + |
