From NeuroLex
Resource:Biological Magnetic Resonance Data Bank
| Name: | Resource:Biological Magnetic Resonance Data Bank |
| Description: | Public depository that collects, annotates, archives, and disseminates important spectral and quantitative data derived from nuclear magnetic resonance (NMR) spectroscopic investigations of biological macromolecules and metabolites recognized by the International Society of Magnetic Resonance and by the IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy. BMRB provides reference information and maintains a collection of NMR pulse sequences and computer software for biomolecular NMR. BMRB is a partner in the Worldwide Protein Data Bank.
The BMRB archive consists of four main data depositories: (i) quantitative NMR spectral parameters for proteins, peptides, nucleic acids, carbohydrates and ligands or cofactors and derived data (relaxation parameters, residual dipolar couplings, hydrogen exchange rates, pK(a) values, etc.), (ii) databases for NMR restraints processed from original author depositions available from the Protein Data Bank, (iii) time-domain spectral data from NMR experiments used to assign spectral resonances and determine the structures of biological macromolecules and (iv) a database of one- and two-dimensional (1)H and (13)C one- and two-dimensional NMR spectra for over 250 metabolites. The BMRB website provides free access to all of these data. BMRB has tools for querying the archive and retrieving information and an ftp site where data in the archive can be downloaded in bulk. BMRB will accept: quantitative NMR data for a peptide, protein, nucleic acid, or polysaccharide and their ligands and cofactors assigned on an atom-specific basis, and data derived from the analysis of such data. Submitted data are to be in valid NMR-STAR format; they may be created by tools that output data in this format. The types of NMR data that can be included in a deposition and the mandatory supporting information accompanying a deposition are reviewed yearly by the BMRB Advisory Board. BMRB data is listed by:
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| Other Name(s): | BioMagResBank |
| Parent Organization: | University of Wisconsin-Madison; Wisconsin; USA |
| Supporting Agency: | National Library of Medicine |
| Related to: | Resource:DataCite, Resource:Worldwide Protein Data Bank, Resource:PDB, Resource:Nucleic Acid Database, Resource:3DVC |
| Resource Type(s): | Data repository, Database, Image collection |
| Keywords: | biomolecular, chemical, chemical shift, chemistry, hydrogen, j-coupling, macromolecule, metabolite, protein structure, rate, relaxation, spectroscopy, structure, Nuclear magnetic resonance spectroscopy, Protein, Peptide, Nucleic Acid, Biomolecule, nuclear magnetic resonance, polysaccharide, ligand, cofactor, carbohydrate, time-domain spectral data, spectral resonance, Visualization, Metabolomics, time-domain, BLAST, Data set, NMR pulse sequence, software resource, Data analysis service |
| Grant: | LM05799 |
| Abbreviation: | BMRB |
| Resource: | Resource |
| URL: | http://www.bmrb.wisc.edu/ |
| PMID: | PMID 18288446, 17984079, 12766409 |
| Publication link: | http://nar.oxfordjournals.org/content/36/suppl_1/D402.long |
| Availability: | Public, Please cite, The community can contribute to this resource. |
| Address: | Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. |
| Id: | nif-0000-21058 |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Categories related to Resource:Biological Magnetic Resonance Data Bank
Resource:NRG-CING, Resource:PDBj - Protein Data Bank Japan, Resource:Worldwide Protein Data Bank
Parts of Resource:Biological Magnetic Resonance Data Bank
Curation status: Curated
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Notes
This page uses this default form:Resource
| Abbrev | BMRB + |
| Address | Department of Biochemistry +, University of Wisconsin-Madison +, Madison +, WI 53706 +, and USA. + |
| Availability | Public +, Please cite +, and The community can contribute to this resource. + |
| CurationStatus | curated + |
| DefiningCitation | http://www.bmrb.wisc.edu/ + |
| Definition | Public depository that collects, annotates … Public depository that collects, annotates, archives, and disseminates important spectral and quantitative data derived from nuclear magnetic resonance (NMR) spectroscopic investigations of biological macromolecules and metabolites recognized by the International Society of Magnetic Resonance and by the IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy. BMRB provides reference information and maintains a collection of NMR pulse sequences and computer software for biomolecular NMR. BMRB is a partner in the Worldwide Protein Data Bank.
The BMRB archive consists of four main data depositories: (i) quantitative NMR spectral parameters for proteins, peptides, nucleic acids, carbohydrates and ligands or cofactors and derived data (relaxation parameters, residual dipolar couplings, hydrogen exchange rates, pK(a) values, etc.), (ii) databases for NMR restraints processed from original author depositions available from the Protein Data Bank, (iii) time-domain spectral data from NMR experiments used to assign spectral resonances and determine the structures of biological macromolecules and (iv) a database of one- and two-dimensional (1)H and (13)C one- and two-dimensional NMR spectra for over 250 metabolites. The BMRB website provides free access to all of these data. BMRB has tools for querying the archive and retrieving information and an ftp site where data in the archive can be downloaded in bulk. BMRB will accept: quantitative NMR data for a peptide, protein, nucleic acid, or polysaccharide and their ligands and cofactors assigned on an atom-specific basis, and data derived from the analysis of such data. Submitted data are to be in valid NMR-STAR format; they may be created by tools that output data in this format. The types of NMR data that can be included in a deposition and the mandatory supporting information accompanying a deposition are reviewed yearly by the BMRB Advisory Board. BMRB data is listed by:
|
| ExampleImage | |
| Grant | Category:LM05799 + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Data repository +, Database +, and Image collection + |
| Id | nif-0000-21058 + |
| Is part of | University of Wisconsin-Madison; Wisconsin; USA + |
| Keywords | Biomolecular +, Chemical +, Chemical shift +, Chemistry +, Hydrogen +, J-coupling +, Macromolecule +, Metabolite +, Protein structure +, Rate +, Relaxation +, Spectroscopy +, Structure +, Nuclear magnetic resonance spectroscopy +, Protein +, Peptide +, Nucleic Acid +, Biomolecule +, Nuclear magnetic resonance +, Polysaccharide +, Ligand +, Cofactor +, Carbohydrate +, Time-domain spectral data +, Spectral resonance +, Visualization +, Metabolomics +, Time-domain +, BLAST +, Data set +, NMR pulse sequence +, Software resource +, and Data analysis service + |
| Label | Resource:Biological Magnetic Resonance Data Bank + |
| ModifiedDate | 23 May 2013 + |
| PMID | 18288446, 17984079, 12766409 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| PublicationLink | http://nar.oxfordjournals.org/content/36/suppl_1/D402.long + |
| RelatedTo | Resource:DataCite +, Resource:Worldwide Protein Data Bank +, Resource:PDB +, Resource:Nucleic Acid Database +, and Resource:3DVC + |
| SuperCategory | Resource + |
| Supporting Agency | National Library of Medicine + |
| Synonym | BioMagResBank + |




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