From NeuroLex
Resource:Brain Architecture Management System
| Name: | Resource:Brain Architecture Management System |
| Description: | Database and repository for information about neural circuitry, storing and analyzing data specifically concerned with nomenclature and its hierarchical taxonomy, with axonal connections between regions, and with the neuronal cell types that form regions and fiber pathways. This set of inference engines currently has 5 interrelated modules: Brain Parts (gray matter regions, major fiber tracts, and ventricles), Cell Types, Molecules, Connections (between regions and cell types), and Relations (between parts identified different neuroanatomical atlases).
BAMS is also an online knowledge management system designed to handle neurobiological information at different levels of organization of the vertebrate nervous system (NS). It handles data and metadata collated from original literature, or inserted by scientists that is associated to four levels of organization of the vertebrate NS: expressed molecules, neuron types and classes, brain regions, and networks of brain regions. BAMS invites and encourages neuroscientists to help populate BAMS with connectivity and cell type data. This is the only way such an ambitious undertaking can move toward being comprehensive. If you would like to set up an account in the system to insert data either in the public part of BAMS, or in the personal account, please contact the system administrator. If you are registered as a collator of BAMS, you can start inserting gene expression data in your Personal account. If you would like to use the newly implemented Personal Workspace, to receive updates about new features and tools added to BAMS, or to know when new data is inserted please go to the Registration page. You can use the Personal Workspace to save your searches of brain regions, neuroanatomical connections, and molecules. |
| Other Name(s): | The Brain Architecture Management System |
| Parent Organization: | University of Southern California; California; USA |
| Supporting Agency: | NIMH, NINDS, NIBIB |
| Related to: | Resource:NIF Data Federation |
| Resource Type(s): | Database, Ontology, Data repository |
| Keywords: | molecular neuroanatomy resource, gene expression, radioactive tracer, immunohistochemistry, neural circuitry, nomenclature, taxonomy, connectivity, pathway, Brain, neuroanatomy, brain region, Connection, Cell type, Molecule |
| Grant: | MH61223, NS16686, NS50792-01 |
| Abbreviation: | BAMS |
| Resource: | Resource |
| URL: | http://brancusi.usc.edu/bkms/ |
| Id: | nif-0000-00018 |
| Organism: | rat, human, macaque, cat, mouse |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Categories related to Resource:Brain Architecture Management System
Resource:NIF Integrated Manually Extracted Annotation, Resource:NIF Integrated Nervous System Connectivity View
Parts of Resource:Brain Architecture Management System
Curation status: Curated
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Notes
This page uses this default form:Resource
| Abbrev | BAMS + |
| CurationStatus | curated + |
| DefiningCitation | http://brancusi.usc.edu/bkms/ + |
| Definition | Database and repository for information ab … Database and repository for information about neural circuitry, storing and analyzing data specifically concerned with nomenclature and its hierarchical taxonomy, with axonal connections between regions, and with the neuronal cell types that form regions and fiber pathways. This set of inference engines currently has 5 interrelated modules: Brain Parts (gray matter regions, major fiber tracts, and ventricles), Cell Types, Molecules, Connections (between regions and cell types), and Relations (between parts identified different neuroanatomical atlases).
BAMS is also an online knowledge management system designed to handle neurobiological information at different levels of organization of the vertebrate nervous system (NS). It handles data and metadata collated from original literature, or inserted by scientists that is associated to four levels of organization of the vertebrate NS: expressed molecules, neuron types and classes, brain regions, and networks of brain regions. BAMS invites and encourages neuroscientists to help populate BAMS with connectivity and cell type data. This is the only way such an ambitious undertaking can move toward being comprehensive. If you would like to set up an account in the system to insert data either in the public part of BAMS, or in the personal account, please contact the system administrator. If you are registered as a collator of BAMS, you can start inserting gene expression data in your Personal account. If you would like to use the newly implemented Personal Workspace, to receive updates about new features and tools added to BAMS, or to know when new data is inserted please go to the Registration page. You can use the Personal Workspace to save your searches of brain regions, neuroanatomical connections, and molecules. at, as collated from the literature. |
| ExampleImage | |
| Grant | Category:MH61223 +, Category:NS16686 +, and Category:NS50792-01 + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Database +, Ontology +, and Data repository + |
| Id | nif-0000-00018 + |
| Is part of | University of Southern California; California; USA + |
| Keywords | Molecular neuroanatomy resource +, Gene expression +, Radioactive tracer +, Immunohistochemistry +, Neural circuitry +, Nomenclature +, Taxonomy +, Connectivity +, Pathway +, Brain +, Neuroanatomy +, Brain region +, Connection +, Cell type +, and Molecule + |
| Label | Resource:Brain Architecture Management System + |
| ModifiedDate | 2 April 2013 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| RelatedTo | Resource:NIF Data Federation + |
| Species | Rat +, Human +, Macaque +, Cat +, and Mouse + |
| SuperCategory | Resource + |
| Supporting Agency | NIMH +, NINDS +, and NIBIB + |
| Synonym | The Brain Architecture Management System + |



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