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Resource:Cell Centered Database

Name: Resource:Cell Centered Database
Description: The Cell Centered Database is a publicly accessible resource for high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging. Techniques range from wide field mosaics taken with multiphoton microscopy to 3D reconstructions of cellular ultrastructure using electron tomography. Contributions from the community are welcome.

The CCDB was designed around the process of reconstruction from 2D micrographs, capturing key steps in the process from experiment to analysis. The CCDB refers to the set of images taken from the as the Microscopy Product. The microscopy product refers to a set of related 2D images taken by light (epifluorescence, transmitted light, confocal or multiphoton) or electron microscopy (conventional or high voltage transmission electron microscopy). These image sets may comprise a tilt series, optical section series, through focus series, serial sections, mosaics, time series or a set of survey sections taken in a single microscopy session that are not related in any systematic way. A given set of data may be more than one product, for example, it is possible for a set of images to be both a mosaic and a tilt series. The Microscopy Product ID serves as the accession number for the CCDB. All microscopy products must belong to a project and be stored along with key specimen preparation details. Each project receives a unique Project ID that groups together related microscopy products. Many of the datasets come from published literature, but publication is not a prerequisite for inclusion in the CCDB. Any datasets that are of high quality and interest to the scientific community can be included in the CCDB.

The goal of the CCDB project is to make unique and valuable datasets available to the scientific community for visualization, reuse and reanalysis. Data in the CCDB can be accessed by performing a Search or by browsing through our Gallery. Data in the CCDB may be downloaded freely and reused for non-profit use within the terms of our usage agreement.
Parent Organization: University of California at San Diego; California; USA
Supporting Agency: NCRR, Resource:The Human Brain Project., NSF, National Institute on Drug Abuse, National Institute of Biomedical Imaging and Bioengineering, National Institute of Mental Health
Related to: NIF Data Federation
Resource Type(s): Database, Data storage repository, Image
Keywords: electron microscope, light microscopy, electron tomography
Grant: RR04050, RR RR08605, DC03192, NSF-ASC 97-5249, MCB-9728338
Abbreviation: CCDB
Resource: Resource
URL: http://ccdb.ucsd.edu
PMID: PMID 12160711
Id: nif-0000-00007
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Facts about Resource:Cell Centered DatabaseRDF feed
AbbrevCCDB  +
CurationStatuscurated  +
DefiningCitationhttp://ccdb.ucsd.edu  +
DefinitionThe Cell Centered Database is a publicly a The Cell Centered Database is a publicly accessible resource for high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging. Techniques range from wide field mosaics taken with multiphoton microscopy to 3D reconstructions of cellular ultrastructure using electron tomography. Contributions from the community are welcome.

The CCDB was designed around the process of reconstruction from 2D micrographs, capturing key steps in the process from experiment to analysis. The CCDB refers to the set of images taken from the as the Microscopy Product. The microscopy product refers to a set of related 2D images taken by light (epifluorescence, transmitted light, confocal or multiphoton) or electron microscopy (conventional or high voltage transmission electron microscopy). These image sets may comprise a tilt series, optical section series, through focus series, serial sections, mosaics, time series or a set of survey sections taken in a single microscopy session that are not related in any systematic way. A given set of data may be more than one product, for example, it is possible for a set of images to be both a mosaic and a tilt series. The Microscopy Product ID serves as the accession number for the CCDB. All microscopy products must belong to a project and be stored along with key specimen preparation details. Each project receives a unique Project ID that groups together related microscopy products. Many of the datasets come from published literature, but publication is not a prerequisite for inclusion in the CCDB. Any datasets that are of high quality and interest to the scientific community can be included in the CCDB.

The goal of the CCDB project is to make unique and valuable datasets available to the scientific community for visualization, reuse and reanalysis. Data in the CCDB can be accessed by performing a Search or by browsing through our Gallery. Data in the CCDB may be downloaded freely and reused for non-profit use within the terms of our usage agreement.
e within the terms of our usage agreement.
ExampleImageCcdb.jpg  +
GrantCategory:RR04050   +, Category:RR RR08605   +, Category:DC03192   +, Category:NSF-ASC 97-5249   +, and Category:MCB-9728338   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +, Data storage repository  +, and Image  +
Idnif-0000-00007  +
Is part ofUniversity of California at San Diego; California; USA  +
KeywordsElectron microscope  +, Optical imaging protocol  +, and Electron tomography  +
LabelResource:Cell Centered Database  +
ModifiedDate19 April 2012  +
PMID12160711  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToNIF Data Federation  +
Supporting AgencyNational Center for Research Resources  +, Resource:Human Brain Project  +, National Institute on Drug Abuse  +, National Institute of Biomedical Imaging and Bioengineering  +, and National Institute of Mental Health  +