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Resource:Drosophila melanogaster Exon Database

Name: Resource:Drosophila melanogaster Exon Database
Description: Database on Drosophila melanogaster exons presented in a splicing graph form. Data is based on release 3.2 of the Drosophila melanogaster genome annotations available at FlyBase. The gene structure information extracted from the annotations were checked, clustered and transformed into splicing graph. The splicing graph form of the gene constructs were then used for classification of the various types of alternative splicing events. In addition, Pfam domains were mapped onto the gene structure. Users can query the database using the query page using BLAST, FlyBase Gene Name, FlyBase Gene Symbol, Pfam Accession Number and Pfam Identifier. This allows users to determine the Drosophila melanogaster homology of their gene using a BLAST search and to visualize the alternative splicing variants if any. Users can also determine genes containing a particular domain using the Pfam Accession Numbers and Identifiers.
[1]
Other Name(s): DEDB : Drosophila melanogaster Exon Database, DEDB - Drosophila melanogaster Exon Database
Abbreviation: DEDB
Parent Organization: National University of Singapore; Singapore
Supporting Agency: Agency for Science Technology and Research; Singapore
Resource Type(s): Database
Resource: Resource
URL: http://proline.bic.nus.edu.sg/dedb/
Id: nif-0000-21118
PMID: PMID 15581431
Related to: Resource:FLYBASE, Resource:OMICtools
Address: Department of Biochemistry, National University of Singapore
Keywords: exon, gene, alternative splicing, annotation, classification, cluster, domain, genome, graph, homology, protein, splicing, structure, transcript, visualize, BLAST
Organism: Drosophila melanogaster
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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References

  1. Lee BT et al. (2004) DEDB: a database of Drosophila melanogaster exons in splicing graph form. BMC Bioinformatics 5: 189 PubMed

Notes

This page uses this default form:Resource

Xref: OMICS_01894



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Facts about Resource:Drosophila melanogaster Exon DatabaseRDF feed
AbbrevDEDB  +
AddressDepartment of Biochemistry  +, and National University of Singapore  +
CurationStatuscurated  +
DefiningCitationhttp://proline.bic.nus.edu.sg/dedb/  +
DefinitionDatabase on Drosophila melanogaster exons Database on Drosophila melanogaster exons presented in a splicing graph form. Data is based on release 3.2 of the Drosophila melanogaster genome annotations available at FlyBase. The gene structure information extracted from the annotations were checked, clustered and transformed into splicing graph. The splicing graph form of the gene constructs were then used for classification of the various types of alternative splicing events. In addition, Pfam domains were mapped onto the gene structure. Users can query the database using the query page using BLAST, FlyBase Gene Name, FlyBase Gene Symbol, Pfam Accession Number and Pfam Identifier. This allows users to determine the Drosophila melanogaster homology of their gene using a BLAST search and to visualize the alternative splicing variants if any. Users can also determine genes containing a particular domain using the Pfam Accession Numbers and Identifiers.
m Accession Numbers and Identifiers.
ExampleImageDEDB.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnif-0000-21118  +
Is part ofNational University of Singapore; Singapore  +
KeywordsExon  +, Gene  +, Alternative splicing  +, Annotation  +, Classification  +, Cluster  +, Domain  +, Genome  +, Graph  +, Homology  +, Protein  +, Splicing  +, Structure  +, Transcript  +, Visualize  +, and BLAST  +
LabelResource:Drosophila melanogaster Exon Database  +
ModifiedDate1 May 2014  +
PMID15581431  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:FLYBASE  +, and Resource:OMICtools  +
SpeciesDrosophila melanogaster  +
SuperCategoryResource  +
Supporting AgencyAgency for Science Technology and Research; Singapore  +
SynonymDEDB : Drosophila melanogaster Exon Database  +, and DEDB - Drosophila melanogaster Exon Database  +