arrow

From NeuroLex

Jump to: navigation, search



Resource:EBI Dbfetch

Name: Resource:EBI Dbfetch
Description: Dbfetch is an acronym for "database fetch". Dbfetch provides an easy way to retrieve entries from various databases at the EBI in a consistent manner and allows you to retrieve up to 50 entries at a time from various up-to-date biological databases. It can be used from any browser as well as well as within a web-aware scripting tool that uses wget, lynx or similar.

From the browser, follow these instructions...

  • Select a database: If you are using the first form to paste your search items: choose a database name from this form. If you are using the second form to upload your search items: the database name is included at the beginning of each line line of the upload file followed by a colon.
  • Enter search terms: These MUST BE in the appropriate database format, up to 200 search items can be queried in one run. If you are using the first form: separate search items with a comma or space. If you are using the second form: separate search items with a new line.
  • Choose an output format: Here you can choose the simpler fasta format, or the databases' default format for the chosen database.
  • Style: You can get your results as text or html.
  • Retrieve! - You are now ready to fetch your results, by pressing the Retrieve button.
Other Name(s): Dbfetch, Database fetch, emblfetch, EMBL fetch
Parent Organization: Resource:European Bioinformatics Institute
Resource Type(s): Database
Resource: Resource
URL: http://www.ebi.ac.uk/Tools/dbfetch/dbfetch
*Id: nlx_40225
Related to: Resource:WSDbfetch (SOAP)
Keywords: Database Browsing, Fetch, tool, Gold standard or authority
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

This resource will be curated within 7 days.

For Resource Owners:
After the resource is curated, you may create a sitemap, which will help keep your registry description up-to-date and inform search engines about your resource.

Note: For a new resource, the website's URL must first be verified by a NIF curator before you may proceed.

Learn more about what NIF can do for your resource.
Proudly proclaim your inclusion in NIF by displaying the "Registered with NIF" button on your site. Please login to create the sitemap. (top right)

Notes

This page uses this default form:Resource

Contributors

Aarnaud



bookmark

*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:EBI DbfetchRDF feed
CurationStatuscurated  +
DefiningCitationhttp://www.ebi.ac.uk/Tools/dbfetch/dbfetch  +
DefinitionDbfetch is an acronym for "database fetch" Dbfetch is an acronym for "database fetch". Dbfetch provides an easy way to retrieve entries from various databases at the EBI in a consistent manner and allows you to retrieve up to 50 entries at a time from various up-to-date biological databases. It can be used from any browser as well as well as within a web-aware scripting tool that uses wget, lynx or similar.

From the browser, follow these instructions...

  • Select a database: If you are using the first form to paste your search items: choose a database name from this form. If you are using the second form to upload your search items: the database name is included at the beginning of each line line of the upload file followed by a colon.
  • Enter search terms: These MUST BE in the appropriate database format, up to 200 search items can be queried in one run. If you are using the first form: separate search items with a comma or space. If you are using the second form: separate search items with a new line.
  • Choose an output format: Here you can choose the simpler fasta format, or the databases' default format for the chosen database.
  • Style: You can get your results as text or html.
  • Retrieve! - You are now ready to fetch your results, by pressing the Retrieve button. results, by pressing the Retrieve button.
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnlx_40225  +
Is part ofResource:European Bioinformatics Institute  +
KeywordsDatabase Browsing  +, Fetch  +, Tool  +, and Gold standard  +
LabelResource:EBI Dbfetch  +
ModifiedDate30 July 2014  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:WSDbfetch (SOAP)  +
SuperCategoryResource  +
SynonymDbfetch  +, Database fetch  +, emblfetch  +, and EMBL fetch  +