From NeuroLex
Resource:EchoBASE
| Name: | Resource:EchoBASE |
| Description: | EchoBase is a database that curates new experimental and bioinformatic information about the genes and gene products of the model bacterium Escherichia coli K-12 strain MG1655. It has been created to integrate information from post-genomic experiments into a single resource with the aim of providing functional predictions for the 1500 or so gene products for which we have no knowledge of their physiological function. While EchoBASE provides a basic annotation of the genome, taken from other databases, its novelty is in the curation of post-genomic experiments and their linkage to genes of unknown function. Experiments published on E. coli are curated to one of two levels. Papers dealing with the determination of function of a single gene are briefly described, while larger dataset are actually included in the database and can be searched and manipulated. This includes data for proteomics studies, protein-protein interaction studies, microarray data, functional genomic approaches (looking at multiple deletion strains for novel phenotypes) and a wide range of predictions that come out of in silico bioinformatic approaches. |
| Other Name(s): | EchoBASE: an integrated post-genomic database for Escherichia coli |
| Parent Organization: | University of York; York; United Kingdom |
| Supporting Agency: | GlaxoSmithKline, BBSRC |
| Resource Type(s): | Database |
| Abbreviation: | EchoBASE |
| Resource: | Resource |
| URL: | http://www.ecoli-york.org/ |
| PMID: | PMID 15608209 |
| Id: | nif-0000-02781 |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Curation status: Curated
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Notes
This page uses this default form:Resource
| Abbrev | EchoBASE + |
| CurationStatus | uncurated + |
| DefiningCitation | http://www.ecoli-york.org/ + |
| Definition | EchoBase is a database that curate … While EchoBASE provides a basic annotation of the genome, taken from other databases, its novelty is in the curation of post-genomic experiments and their linkage to genes of unknown function. Experiments published on E. coli are curated to one of two levels. Papers dealing with the determination of function of a single gene are briefly described, while larger dataset are actually included in the database and can be searched and manipulated. This includes data for proteomics studies, protein-protein interaction studies, microarray data, functional genomic approaches (looking at multiple deletion strains for novel phenotypes) and a wide range of predictions that come out of in silico bioinformatic approaches. |
| ExampleImage | |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Database + |
| Id | nif-0000-02781 + |
| Is part of | University of York; York; United Kingdom + |
| Label | Resource:EchoBASE + |
| ModifiedDate | 9 August 2011 + |
| PMID | 15608209 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| SuperCategory | Resource + |
| Supporting Agency | GlaxoSmithKline +, and BBSRC + |
| Synonym | EchoBASE: an integrated post-genomic database for Escherichia coli + |



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