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Resource:EcoliWiki

Name: Resource:EcoliWiki
Description: A component of EcoliHub, EcoliWiki is a wiki-based system for finding, editing, and adding information about E. coli K-12 and other model organism strains of E. coli. EcoliWiki is being constructed to include information about bacteriophage, plasmids, and mobile genetic elements.

Information should be easily accessible and correct, and users have the right to edit any information they feel is incorrect.

Most of the E. coli information was initially seeded with a subset of information from parsing EcoCyc data dumps. For phage gamma and the F plasmid, Genbank accessions were converted to GFF, which was parsed into the appropriate tables. Other sources of content include:

  • user additions
  • monthly addition of annotations from EcoCyc
  • structural data from the PDB
  • domains and motif information from InterPro
  • various databases including EcoGene, RegulonDB, Genbank, GenoBase, ASAP
  • many many scientific papers

EcoliWiki participates in the RefGenome project.

EcoliWiki provides REST web services as part of the EcoliHub Web Services infrastructure project.
Abbreviation: EcoliWiki
Parent Organization: Resource:PortEco
Supporting Agency: NIGMS
Grant: U24GM088849
Resource Type(s): Wiki, Web service
Resource: Resource
URL: http://ecoliwiki.net/colipedia/index.php/Welcome_to_EcoliWiki
*Id: nlx_68806
Keywords: Phantom gene, genome sequence, bacteriophage, Escherichia coli, E. coli, prokaryotic, gene, model organism, annotation
Organism: Escherichia coli
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Notes

This page uses this default form:Resource

Contributors

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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:EcoliWikiRDF feed
AbbrevEcoliWiki  +
Commentorg-id: ecoliwiki
CurationStatusuncurated  +
DefiningCitationhttp://ecoliwiki.net/colipedia/index.php/Welcome_to_EcoliWiki  +
DefinitionA component of EcoliHub, EcoliWiki is a wi A component of EcoliHub, EcoliWiki is a wiki-based system for finding, editing, and adding information about E. coli K-12 and other model organism strains of E. coli. EcoliWiki is being constructed to include information about bacteriophage, plasmids, and mobile genetic elements.

Information should be easily accessible and correct, and users have the right to edit any information they feel is incorrect.

Most of the E. coli information was initially seeded with a subset of information from parsing EcoCyc data dumps. For phage gamma and the F plasmid, Genbank accessions were converted to GFF, which was parsed into the appropriate tables. Other sources of content include:

  • user additions
  • monthly addition of annotations from EcoCyc
  • structural data from the PDB
  • domains and motif information from InterPro
  • various databases including EcoGene, RegulonDB, Genbank, GenoBase, ASAP
  • many many scientific papers

EcoliWiki participates in the RefGenome project.

EcoliWiki provides REST web services as part of the EcoliHub Web Services infrastructure project.
liHub Web Services infrastructure project.
ExampleImageEcoliWiki.PNG  +
GrantCategory:U24GM088849   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleWiki  +, and Web service  +
Idnlx_68806  +
Is part ofResource:PortEco  +
KeywordsPhantom gene  +, Genome sequence  +, Bacteriophage  +, Escherichia coli  +, E. coli  +, Prokaryotic  +, Gene  +, Model organism  +, and Annotation  +
LabelResource:EcoliWiki  +
ModifiedDate3 July 2012  +
Page has default formThis property is a special property in this wiki.Resource  +
SpeciesEscherichia coli  +
SuperCategoryResource  +
Supporting AgencyNIGMS  +