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Resource:GEN2PHEN Knowledge Centre

Name: Resource:GEN2PHEN Knowledge Centre
Description: Portal that unifies human and model organism genetic variation databases towards increasingly holistic views into Genotype-To-Phenotype (G2P) data, and links this system into other biomedical knowledge sources via genome browser functionality.

The project has the following specific objectives:

  • To analyze the G2P field and thus determine emerging needs and practices
  • To develop key standards for the G2P database field
  • To create generic database components, services and integration infrastructures for the G2P database domain
  • To create search modalities and data presentation solutions for G2P knowledge
  • To facilitate the process of populating G2P databases
  • To build a major G2P internet portal
  • To deploy GEN2PHEN solutions to the community
  • To address system durability and long-term financing
  • To undertake a whole-system utility and validation pilot study

The GEN2PHEN Consortium members have been selected from a talented pool of European research groups and companies that are interested in the G2P database challenge. Additionally, a few non-EU participants have been included to bring extra capabilities to the initiative. The final constellation is characterized by broad and proven competence, a network of established working relationships, and high-level roles/connections within other significant projects in this domain.

There is a listing of Locus-specific databases (LSDBs) where you may search by gene symbol or database name. The wiki contains documents and discussions about Gen2Phen's efforts to produce exchange formats and consistent interfaces for LSDBs. Standardizing access to LSDB data is one of the core aims of Gen2Phen. Improved abilities to query, visualize and federate data can be achieved by having well-defined interfaces and consistent exchange formats. See the Use Cases wiki page for our consideration of what makes these issues important.
Other Name(s): GEN2PHEN
Grant: 200754
Resource Type(s): Database
Resource: Resource
URL: http://www.gen2phen.org
*Id: nif-0000-30605
Listed By: Resource:3DVC
Keywords: Genotype-Phenotype, Data federation
Link to OWL / RDF: Download this content as OWL/RDF

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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:GEN2PHEN Knowledge CentreRDF feed
CurationStatusuncurated  +
DefiningCitationhttp://www.gen2phen.org  +
DefinitionPortal that unifies human and model organi Portal that unifies human and model organism genetic variation databases towards increasingly holistic views into Genotype-To-Phenotype (G2P) data, and links this system into other biomedical knowledge sources via genome browser functionality.

The project has the following specific objectives:

  • To analyze the G2P field and thus determine emerging needs and practices
  • To develop key standards for the G2P database field
  • To create generic database components, services and integration infrastructures for the G2P database domain
  • To create search modalities and data presentation solutions for G2P knowledge
  • To facilitate the process of populating G2P databases
  • To build a major G2P internet portal
  • To deploy GEN2PHEN solutions to the community
  • To address system durability and long-term financing
  • To undertake a whole-system utility and validation pilot study

The GEN2PHEN Consortium members have been selected from a talented pool of European research groups and companies that are interested in the G2P database challenge. Additionally, a few non-EU participants have been included to bring extra capabilities to the initiative. The final constellation is characterized by broad and proven competence, a network of established working relationships, and high-level roles/connections within other significant projects in this domain.

There is a listing of Locus-specific databases (LSDBs) where you may search by gene symbol or database name. The wiki contains documents and discussions about Gen2Phen's efforts to produce exchange formats and consistent interfaces for LSDBs. Standardizing access to LSDB data is one of the core aims of Gen2Phen. Improved abilities to query, visualize and federate data can be achieved by having well-defined interfaces and consistent exchange formats. See the Use Cases wiki page for our consideration of what makes these issues important.
tion of what makes these issues important.
GrantCategory:200754   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnif-0000-30605  +
KeywordsGenotype-Phenotype  +, and Data federation  +
LabelResource:GEN2PHEN Knowledge Centre  +
ListedbyResource:3DVC  +
ModifiedDate11 December 2014  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
SynonymGEN2PHEN  +