arrow

From NeuroLex

Jump to: navigation, search



Resource:GO

Name: Resource:GO
Description: A community-based bioinformatics resource consisting of three structured controlled vocabularies (ontologies) for the annotation of gene products with respect to their molecular function, cellular component, and biological role in a species-independent manner. This initiative to standardize the representation of gene and gene product attributes across species and databases is an effort to address the need for consistent descriptions of gene products in different databases. The Gene Ontology project encourages input from the community into both the content of the GO and annotation using GO.

There are three separate aspects to this effort: first, they write and maintain the ontologies themselves; second, they make cross-links between the ontologies and the genes and gene products in the collaborating databases; and third, they develop tools that facilitate the creation, maintenance and use of ontologies.

The controlled vocabularies are structured so that you can query them at different levels: for example, you can use GO to find all the gene products in the mouse genome that are involved in signal transduction, or you can zoom in on all the receptor tyrosine kinases. This structure also allows annotators to assign properties to gene products at different levels, depending on how much is known about a gene product.[1]
Other Name(s): GO - Gene Ontology, Gene Ontology, the Gene Ontology
Abbreviation: GO, GO REF
Parent Organization: Gene Ontology Consortium
Supporting Agency: NHGRI, European Union, (RTD Programme "Quality of Life and Management of Living Resources"), AstraZeneca
Grant: 5P41HG002273-09, QLRI-CT-2001-00981, QLRI-CT-2001-00015
Resource Type(s): Ontology, International standard specification, Database
Resource: Resource
URL: http://www.geneontology.org/
*Id: nif-0000-02915
PMID: PMID 23161678, 10802651
Related to: Resource:NIF Data Federation, Resource:Monarch Initiative, Resource:BioPortal, Resource:OBO, Resource:OMICtools
Availability: The community can contribute to this resource, Acknowledgement required
Keywords: gene ontology, Gold standard or authority, gene, annotation, gene annotation, biological process, cellular component, molecular function, Bioinformatics, gene product, bioinformatics, OBO
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:GO

Resource:3D-Interologs, Resource:APID: Agile Protein Interaction DataAnalyzer, Resource:AgingDB, Resource:Algal Functional Annotation Tool, Resource:AnimalTFDB, Resource:Arabidopsis Hormone Database, Resource:Arabidopsis thaliana Protein Interactome Database, Resource:AutismKB, Resource:Automated Microarray Pipeline, Resource:Avadis, Resource:Babelomics, Resource:BiNGO: A Biological Networks Gene Ontology tool, Resource:BioPerl, Resource:Bioconductor, Resource:Biomine, Resource:Blast2GO, Resource:Blip: Biomedical Logic Programming, Resource:CELDA Ontology, Resource:CGAP GO Browser, Resource:CLASSIFI - Cluster Assignment for Biological Inference, Resource:CLENCH, Resource:COBrA, Resource:CRCView, Resource:Candida Genome Database, Resource:Candidate Genes to Inherited Diseases, Resource:Cardiovascular Gene Ontology Annotation Initiative, Resource:CateGOrizer, Resource:Centre for Modeling Human Disease Gene Trap Resource, Resource:Cerebellar Development Transcriptome Database, Resource:CharProtDB: Characterized Protein Database, Resource:ClueGO, Resource:CoPub, Resource:Comparative Toxicogenomics Database, Resource:ConceptWiki, Resource:Coremine Medical, Resource:Cotton EST Database, Resource:DATFAP, Resource:DAVID, Resource:DBD - Slim Gene Ontology, Resource:Database for Annotation Visualization and Integrated Discovery, Resource:Diabetes Disease Portal, Resource:DynGO, Resource:EASE: the Expression Analysis Systematic Explorer, Resource:EBIMed, Resource:ECO, Resource:ECgene: Gene Modeling with Alternative Splicing, Resource:EGAN: Exploratory Gene Association Networks, Resource:EMAGE Gene Expression Database, Resource:ErmineJ, Resource:Expression Profiler … further results

Parts of Resource:GO

Curation status: Uncurated

This resource will be curated within 7 days.

For Resource Owners:
After the resource is curated, you may create a sitemap, which will help keep your registry description up-to-date and inform search engines about your resource.

Note: For a new resource, the website's URL must first be verified by a NIF curator before you may proceed.

Learn more about what NIF can do for your resource.
Proudly proclaim your inclusion in NIF by displaying the "Registered with NIF" button on your site. Please login to create the sitemap. (top right)

References

  1. Blake JA et al. (2013) Gene Ontology annotations and resources. Nucleic Acids Res 41: D530-5 PubMed

Notes

This page uses this default form:Resource

Xref: OMICS_02278

Alt. URL: http://bioportal.bioontology.org/ontologies/GO

Contributors

Aarnaud, Ccdbuser, Zaidaziz



bookmark

*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:GORDF feed
AbbrevGO, GO REF  +
AltURLhttp://bioportal.bioontology.org/ontologies/GO  +
AvailabilityThe community can contribute to this resource  +, and Acknowledgement required  +
CommentContact: Go Helpdesk, go-helpdesk (at) ebi.ac.uk
CurationStatuscurated  +
DefiningCitationhttp://www.geneontology.org/  +
DefinitionA community-based bioinformatics resource A community-based bioinformatics resource consisting of three structured controlled vocabularies (ontologies) for the annotation of gene products with respect to their molecular function, cellular component, and biological role in a species-independent manner. This initiative to standardize the representation of gene and gene product attributes across species and databases is an effort to address the need for consistent descriptions of gene products in different databases. The Gene Ontology project encourages input from the community into both the content of the GO and annotation using GO.

There are three separate aspects to this effort: first, they write and maintain the ontologies themselves; second, they make cross-links between the ontologies and the genes and gene products in the collaborating databases; and third, they develop tools that facilitate the creation, maintenance and use of ontologies.

The controlled vocabularies are structured so that you can query them at different levels: for example, you can use GO to find all the gene products in the mouse genome that are involved in signal transduction, or you can zoom in on all the receptor tyrosine kinases. This structure also allows annotators to assign properties to gene products at different levels, depending on how much is known about a gene product.
on how much is known about a gene product.
ExampleImageGo.png  +
GrantCategory:5P41HG002273-09   +, Category:QLRI-CT-2001-00981   +, and Category:QLRI-CT-2001-00015   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleOntology  +, International standard specification  +, and Database  +
Idnif-0000-02915  +
Is part ofGene Ontology Consortium  +
KeywordsGene ontology  +, Gene  +, Annotation  +, Gene annotation  +, Biological process  +, Cellular component  +, Molecular function  +, Bioinformatics  +, Gene product  +, OBO  +, and Gold standard  +
LabelResource:GO  +
ModifiedDate30 July 2014  +
PMID23161678, 10802651  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:NIF Data Federation  +, Resource:Monarch Initiative  +, Resource:BioPortal  +, Resource:OBO  +, and Resource:OMICtools  +
SuperCategoryResource  +
Supporting AgencyNational Human Genome Research Institute  +, European Union  +, (RTD Programme "Quality of Life and Management of Living Resources")  +, and AstraZeneca  +
SynonymGO - Gene Ontology  +, Gene Ontology  +, and the Gene Ontology  +
XrefResource:GO  +