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Resource:GenBank

Name: Resource:GenBank
Description: NIH genetic sequence database that provides an annotated collection of all publicly available DNA sequences for almost 280 000 formally described species. (Jan 2014) These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. It is part of the International Nucleotide Sequence Database Collaboration and daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP.[1]
Abbreviation: GB
Parent Organization: Resource:NCBI
Supporting Agency: NLM
Resource Type(s): Database, Data repository
Resource: Resource
URL: http://www.ncbi.nlm.nih.gov/Genbank/
Id: nif-0000-02873
PMID: PMID 24217914, 23193287, 21071399
Related application: Research
Related to: Resource:CINERGI, Resource:OMICtools, Resource:DDBJ - DNA Data Bank of Japan, Resource:European Molecular Biology Laboratory; Heidelberg; Germany, Resource:INSDC, Resource:re3data.org
Availability: Public, The community can contribute to this resource
Address: National Center for Biotechnology Information, U.S. National Library of Medicine, 8600 Rockville Pike, Bethesda MD, 20894 USA
Keywords: genetic sequence, DNA sequence, human genetics, human genome, Gold standard or authority, nucleotide sequence, nucleotide, DNA, DNA data bank, Gene mapping, Genetics
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:GenBank

Resource:Anopheles gambiae (African malaria mosquito) genome view, Resource:DDBJ - DNA Data Bank of Japan, Resource:HS3D - Homo Sapiens Splice Sites Dataset, Resource:High Throughput Genomic Sequences Division, Resource:INSDC, Resource:Influenza Virus Resource, Resource:MaizeGDB, Resource:Mammalian Gene Collection, Resource:NCBI Assembly Archive Viewer, Resource:NCBI BioSample, Resource:NCBI EST, Resource:NCBI Nucleotide, Resource:NCBI Protein, Resource:SpliceDB, Resource:TPA, Resource:TrED, Resource:Xenopus Gene Collection, Resource:Zebrafish Gene Collection

Curation status: Uncurated

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References

  1. Benson DA et al. (2014) GenBank. Nucleic Acids Res 42: D32-7 PubMed

Notes

This page uses this default form:Resource

Xref: OMICS_01650



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Facts about Resource:GenBankRDF feed
AbbrevGB  +
AddressNational Center for Biotechnology Information  +, U.S. National Library of Medicine  +, 8600 Rockville Pike  +, Bethesda MD  +, and 20894 USA  +
AvailabilityPublic  +, and The community can contribute to this resource  +
CommentSample Type: DNA sequence, nucleotide sequence, nucleotide, DNA Start date: 1983
Type: disciplinary
Deposit: Accepting data for deposit by qualified researchers- http://www.ncbi.nlm.nih.gov/genbank/submit
CurationStatuscurated  +
DefiningCitationhttp://www.ncbi.nlm.nih.gov/Genbank/  +
DefinitionNIH genetic sequence database that provide NIH genetic sequence database that provides an annotated collection of all publicly available DNA sequences for almost 280 000 formally described species. (Jan 2014) These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. It is part of the International Nucleotide Sequence Database Collaboration and daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. the GenBank database are available by FTP.
ExampleImageGenBank.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +, and Data repository  +
Idnif-0000-02873  +
Is part ofResource:NCBI  +
KeywordsGenetic sequence  +, DNA sequence  +, Human genetics  +, Human genome  +, Gold standard or authority  +, Nucleotide sequence  +, Nucleotide  +, DNA  +, DNA data bank  +, Gene mapping  +, and Genetics  +
LabelResource:GenBank  +
ModifiedDate13 June 2014  +
PMID24217914, 23193287, 21071399  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:CINERGI  +, Resource:OMICtools  +, Resource:DDBJ - DNA Data Bank of Japan  +, Resource:European Molecular Biology Laboratory; Heidelberg; Germany  +, Resource:INSDC  +, and Resource:re3data.org  +
Related applicationResearch  +
SuperCategoryResource  +
Supporting AgencyNLM  +