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Resource:GenBank

Name: Resource:GenBank
Description: A comprehensive database that contains publicly available nucleotide sequences for almost 280 000 formally described species. (2014) These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP.[1]
Parent Organization: Resource:NCBI
Supporting Agency: NLM
Related to: Resource:CINERGI, Resource:OMICtools, Resource:DDBJ - DNA Data Bank of Japan, Resource:European Molecular Biology Laboratory; Heidelberg; Germany, Resource:INSDC
Resource Type(s): Database, Data repository
Keywords: genetic sequence, DNA sequence, human genetics, human genome, Gold standard or authority, nucleotide sequence, nucleotide, DNA
Abbreviation: GB
Resource: Resource
URL: http://www.ncbi.nlm.nih.gov/Genbank/index.html
PMID: PMID 24217914, 23193287, 21071399
Related application: Research
Availability: Public, The community can contribute to this resource
Id: nif-0000-02873
Organism: over 380000
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:GenBank

Resource:HS3D - Homo Sapiens Splice Sites Dataset, Resource:High Throughput Genomic Sequences Division, Resource:INSDC, Resource:Mammalian Gene Collection, Resource:NCBI Assembly Archive Viewer, Resource:NCBI BioSample, Resource:SpliceDB, Resource:TrED, Resource:Xenopus Gene Collection, Resource:Zebrafish Gene Collection, Resource:dbEST

Curation status: Curated

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References

  1. Benson DA et al. (2014) GenBank. Nucleic Acids Res 42: D32-7 PubMed

Notes

This page uses this default form:Resource

Xref: OMICS_01650



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Facts about Resource:GenBankRDF feed
AbbrevGB  +
AvailabilityPublic  +, and The community can contribute to this resource  +
CommentSample Type: DNA sequence, nucleotide sequence, nucleotide, DNA
CurationStatuscurated  +
DefiningCitationhttp://www.ncbi.nlm.nih.gov/Genbank/index.html  +
DefinitionA comprehensive database that contains pub A comprehensive database that contains publicly available nucleotide sequences for almost 280 000 formally described species. (2014) These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. the GenBank database are available by FTP.
ExampleImageGenBank.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +, and Data repository  +
Idnif-0000-02873  +
Is part ofResource:NCBI  +
KeywordsGenetic sequence  +, DNA sequence  +, Human genetics  +, Human genome  +, Gold standard or authority  +, Nucleotide sequence  +, Nucleotide  +, and DNA  +
LabelResource:GenBank  +
ModifiedDate13 February 2014  +
PMID24217914, 23193287, 21071399  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:CINERGI  +, Resource:OMICtools  +, Resource:DDBJ - DNA Data Bank of Japan  +, Resource:European Molecular Biology Laboratory; Heidelberg; Germany  +, and Resource:INSDC  +
Related applicationResearch  +
SpeciesOver 380000  +
SuperCategoryResource  +
Supporting AgencyNational Library of Medicine  +