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Resource:Gene Interaction Extraction from the Literature

Name: Resource:Gene Interaction Extraction from the Literature
Description:
GIN-IE is a high precision system for extracting protein/gene interactions, interaction cue words, and directionality from the literature. Syntax-aware inferences about the roles of the entities are made by using the syntactic and dependency parse tree structures of the sentences. Negation and speculation are frequently occurring language phenomena that modify the factuality of the information contained in text. GIN-IE detects and distinguishes interactions that are extracted from negated or speculative sentences. GIN-IE has been integrated with the NCIBI PubMed daily update and processing pipeline. The extracted interactions are accessible through MimiWeb.
Other Name(s): GIN-IE
Parent Organization: National Center for Integrative Biomedical Informatics; National Institutes of Health
Resource Type(s): software
Keywords: extract, gene, interaction, protein, sentence, structure
Resource: Resource
URL: http://portal.ncibi.org/gateway/gin.html
Id: nif-0000-33151
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Contributors

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Facts about Resource:Gene Interaction Extraction from the LiteratureRDF feed
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<disco xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance&quot; format="discoToNifRegistry.xsd" version="1.0" version-date="2009-07-30">

<resource blueprint="true" disco_id="75" full_name="GIN (Gene Interaction Network) is a system for browsing articles and molecule interaction information. &#xA;" last-discoed="2009-08-29" nif_id="new" short_name="GIN - Gene Interaction Network" url="http://portal.ncibi.org/gateway/gin.html&quot;>
<parent_organization full_name="University of Michigan" />
<admin_contact email="[email protected]" name="Dragomir Radev" phone="" />
<tech_contact name="Kevin Smith" />
<keyword type="center" value="CTSA" />
<keyword ont_term_id="Bioinformatics" ont_url="http://bioontology.org/ontologies/ResearchArea.owl#&quot; ontology="area" type="related_areas_of_research" value="Bioinformatics" />
<keyword ont_term_id="Research_IT" ont_url="http://bioontology.org/ontologies/ResearchArea.owl#&quot; ontology="area" type="related_areas_of_research" value="Research_IT" />
<keyword type="technical_support" value="Available" />
<keyword type="resource_sharable" value="Yes" />
<keyword ont_term_id="Natural_Language_Processing" ont_url="http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#&quot; ontology="BRO" type="data_type" value="Natural_Language_Processing" />
</resource>

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 ;/resource>

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DefiningCitationhttp://portal.ncibi.org/gateway/gin.html &nbsp;+
Definition

GIN-IE is a high precision system

GIN-IE is a high precision system for extracting protein/gene interactions, interaction cue words, and directionality from the literature. Syntax-aware inferences about the roles of the entities are made by using the syntactic and dependency parse tree structures of the sentences. Negation and speculation are frequently occurring language phenomena that modify the factuality of the information contained in text. GIN-IE detects and distinguishes interactions that are extracted from negated or speculative sentences. GIN-IE has been integrated with the NCIBI PubMed daily update and processing pipeline. The extracted interactions are accessible through MimiWeb.
ions are accessible through MimiWeb.
Has default formThis property is a special property in this wiki.Resource  +
Has roleSoftware  +
Idnif-0000-33151  +
Is part ofNational Center for Integrative Biomedical Informatics; National Institutes of Health  +
KeywordsExtract  +, Gene  +, Interaction  +, Protein  +, Sentence  +, and Structure  +
LabelResource:Gene Interaction Extraction from the Literature  +
ModifiedDate14 October 2010  +
SuperCategoryResource  +
SynonymGIN-IE  +