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Resource:Gene Ontology Browsing Utility (GOBU)

Name: Resource:Gene Ontology Browsing Utility (GOBU)
Description: Gene Ontology Browsing Utility (GOBU) (GOBU) is a Java-based software program for integrating biological annotation catalogs under an extendable software architecture. Users may interact with the Gene Ontology and user-defined hierarchy data of genes, and then use its plugins to (and not limited to) (1) browse the GO hierarchy with user defined data, (2) browse GO-oriented expression levels in the user data, (3) compute GO enrichment, and/or (4) customize data reporting.

A set of classes and utility functions has been established so that a customized program can be made as a plugin or a command-line tool that programmically manipulate the Gene Ontology and specified user data. See the source code repository for examples.

Reference Lin WD, Chen YC, Ho JM, Hsiao CD. GOBU: Toward an Integration Interface for Biological Objects. Journal of Information Science and Engineering. 2006 22(1):19-29.

Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible
Other Name(s): Gene Ontology Browsing Utility
Abbreviation: GOBU
Parent Organization: Academia Sinica; Taipei; Taiwan
Resource Type(s): Software resource, Source code
Resource: Resource
URL: http://bc02.iis.sinica.edu.tw/gobu/manual/index.html
*Id: nlx_149098
Related to: Resource:Gene Ontology Tools, Resource:GO
Availability: Open source - Free for academic use
Keywords: Annotation, Gene, Browser, Computation, Visualization, software library, statistical analysis, term enrichment, ontology or annotation browser, ontology or annotation visualization
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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Notes

This page uses this default form:Resource

Contributors

Aarnaud, Yazin



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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:Gene Ontology Browsing Utility (GOBU)RDF feed
AbbrevGOBU  +
AvailabilityOpen source - Free for academic use  +
CommentGO data updates: not applicable (e.g. because users provide data)
CurationStatuscurated  +
DefiningCitationhttp://bc02.iis.sinica.edu.tw/gobu/manual/index.html  +
DefinitionGene Ontology Browsing Utility (GOBU) (GOB Gene Ontology Browsing Utility (GOBU) (GOBU) is a Java-based software program for integrating biological annotation catalogs under an extendable software architecture. Users may interact with the Gene Ontology and user-defined hierarchy data of genes, and then use its plugins to (and not limited to) (1) browse the GO hierarchy with user defined data, (2) browse GO-oriented expression levels in the user data, (3) compute GO enrichment, and/or (4) customize data reporting.

A set of classes and utility functions has been established so that a customized program can be made as a plugin or a command-line tool that programmically manipulate the Gene Ontology and specified user data. See the source code repository for examples.

Reference Lin WD, Chen YC, Ho JM, Hsiao CD. GOBU: Toward an Integration Interface for Biological Objects. Journal of Information Science and Engineering. 2006 22(1):19-29.

Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible
patible, Linux compatible, Unix compatible
ExampleImageGOBU.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleSoftware resource  +, and Source code  +
Idnlx_149098  +
Is part ofAcademia Sinica; Taipei; Taiwan  +
KeywordsAnnotation  +, Gene  +, Browser  +, Computation  +, Visualization  +, Software library  +, Statistical analysis  +, Term enrichment  +, Ontology or annotation browser  +, and Ontology or annotation visualization  +
LabelResource:Gene Ontology Browsing Utility (GOBU)  +
ListedbyResource:Gene Ontology Tools  +
ModifiedDate11 December 2014  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:GO  +
SuperCategoryResource  +
SynonymGene Ontology Browsing Utility  +