EditFrom NeuroLex
Resource:Gene Ontology Browsing Utility (GOBU)
| Name: | Resource:Gene Ontology Browsing Utility (GOBU) |
| Description: | Gene Ontology Browsing Utility (GOBU) (GOBU) is a Java-based software program for integrating biological annotation catalogs under an extendable software architecture. Users may interact with the Gene Ontology and user-defined hierarchy data of genes, and then use its plugins to (and not limited to) (1) browse the GO hierarchy with user defined data, (2) browse GO-oriented expression levels in the user data, (3) compute GO enrichment, and/or (4) customize data reporting.
A set of classes and utility functions has been established so that a customized program can be made as a plugin or a command-line tool that programmically manipulate the Gene Ontology and specified user data. See the source code repository for examples. Reference Lin WD, Chen YC, Ho JM, Hsiao CD. GOBU: Toward an Integration Interface for Biological Objects. Journal of Information Science and Engineering. 2006 22(1):19-29. Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible |
| Other Name(s): | Gene Ontology Browsing Utility |
| Parent Organization: | Academia Sinica; Taipei; Taiwan |
| Related to: | Resource:Gene Ontology Tools, Resource:GO |
| Resource Type(s): | Software resource, Source code |
| Keywords: | Annotation, Gene, Browser, Computation, Visualization, software library, statistical analysis, term enrichment, ontology or annotation browser, ontology or annotation visualization |
| Abbreviation: | GOBU |
| Resource: | Resource |
| URL: | http://bc02.iis.sinica.edu.tw/gobu/manual/index.html |
| Availability: | Open source - Free for academic use |
| Id: | nlx_149098 |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Curation status: Curated
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Notes
This page uses this default form:Resource
| Abbrev | GOBU + |
| Availability | Open source - Free for academic use + |
| Comment | GO data updates: not applicable (e.g. because users provide data) |
| CurationStatus | curated + |
| DefiningCitation | http://bc02.iis.sinica.edu.tw/gobu/manual/index.html + |
| Definition | Gene Ontology Browsing Utility (GOBU) (GOB … Gene Ontology Browsing Utility (GOBU) (GOBU) is a Java-based software program for integrating biological annotation catalogs under an extendable software architecture. Users may interact with the Gene Ontology and user-defined hierarchy data of genes, and then use its plugins to (and not limited to) (1) browse the GO hierarchy with user defined data, (2) browse GO-oriented expression levels in the user data, (3) compute GO enrichment, and/or (4) customize data reporting.
A set of classes and utility functions has been established so that a customized program can be made as a plugin or a command-line tool that programmically manipulate the Gene Ontology and specified user data. See the source code repository for examples. Reference Lin WD, Chen YC, Ho JM, Hsiao CD. GOBU: Toward an Integration Interface for Biological Objects. Journal of Information Science and Engineering. 2006 22(1):19-29. Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible patible, Linux compatible, Unix compatible |
| ExampleImage |  + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Software resource +, and Source code + |
| Id | nlx_149098 + |
| Is part of | Academia Sinica; Taipei; Taiwan + |
| Keywords | Annotation +, Gene +, Browser +, Computation +, Visualization +, Software library +, Statistical analysis +, Term enrichment +, Ontology or annotation browser +, and Ontology or annotation visualization + |
| Label | Resource:Gene Ontology Browsing Utility (GOBU) + |
| ModifiedDate | 9 July 2012 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| RelatedTo | Resource:Gene Ontology Tools +, and Resource:GO + |
| SuperCategory | Resource + |
| Synonym | Gene Ontology Browsing Utility + |
