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Resource:Gene Ontology Browsing Utility (GOBU)

Name: Resource:Gene Ontology Browsing Utility (GOBU)
Description: Gene Ontology Browsing Utility (GOBU) (GOBU) is a Java-based software program for integrating biological annotation catalogs under an extendable software architecture. Users may interact with the Gene Ontology and user-defined hierarchy data of genes, and then use its plugins to (and not limited to) (1) browse the GO hierarchy with user defined data, (2) browse GO-oriented expression levels in the user data, (3) compute GO enrichment, and/or (4) customize data reporting.

A set of classes and utility functions has been established so that a customized program can be made as a plugin or a command-line tool that programmically manipulate the Gene Ontology and specified user data. See the source code repository for examples.

Reference Lin WD, Chen YC, Ho JM, Hsiao CD. GOBU: Toward an Integration Interface for Biological Objects. Journal of Information Science and Engineering. 2006 22(1):19-29.

Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible
Other Name(s): Gene Ontology Browsing Utility
Abbreviation: GOBU
Parent Organization: Academia Sinica; Taipei; Taiwan
Resource Type(s): Software resource, Source code
Resource: Resource
URL: http://bc02.iis.sinica.edu.tw/gobu/manual/index.html
Id: nlx_149098
Related to: Resource:Gene Ontology Tools, Resource:GO
Availability: Open source - Free for academic use
Keywords: Annotation, Gene, Browser, Computation, Visualization, software library, statistical analysis, term enrichment, ontology or annotation browser, ontology or annotation visualization
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Notes

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Contributors

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Facts about Resource:Gene Ontology Browsing Utility (GOBU)RDF feed
AbbrevGOBU  +
AvailabilityOpen source - Free for academic use  +
CommentGO data updates: not applicable (e.g. because users provide data)
CurationStatuscurated  +
DefiningCitationhttp://bc02.iis.sinica.edu.tw/gobu/manual/index.html  +
DefinitionGene Ontology Browsing Utility (GOBU) (GOB Gene Ontology Browsing Utility (GOBU) (GOBU) is a Java-based software program for integrating biological annotation catalogs under an extendable software architecture. Users may interact with the Gene Ontology and user-defined hierarchy data of genes, and then use its plugins to (and not limited to) (1) browse the GO hierarchy with user defined data, (2) browse GO-oriented expression levels in the user data, (3) compute GO enrichment, and/or (4) customize data reporting.

A set of classes and utility functions has been established so that a customized program can be made as a plugin or a command-line tool that programmically manipulate the Gene Ontology and specified user data. See the source code repository for examples.

Reference Lin WD, Chen YC, Ho JM, Hsiao CD. GOBU: Toward an Integration Interface for Biological Objects. Journal of Information Science and Engineering. 2006 22(1):19-29.

Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible
patible, Linux compatible, Unix compatible
ExampleImageGOBU.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleSoftware resource  +, and Source code  +
Idnlx_149098  +
Is part ofAcademia Sinica; Taipei; Taiwan  +
KeywordsAnnotation  +, Gene  +, Browser  +, Computation  +, Visualization  +, Software library  +, Statistical analysis  +, Term enrichment  +, Ontology or annotation browser  +, and Ontology or annotation visualization  +
LabelResource:Gene Ontology Browsing Utility (GOBU)  +
ModifiedDate9 July 2012  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:Gene Ontology Tools  +, and Resource:GO  +
SuperCategoryResource  +
SynonymGene Ontology Browsing Utility  +