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Resource:Gene Ontology Tools

Name: Resource:Gene Ontology Tools
Description: Collection of tools developed by the GO Consortium and by third parties. Tools are listed by category (see tables below) or alphabetically and continue to be improved and expanded. Submit your GO Tool, http://www.geneontology.org/cgi-bin/add-tool.cgi. For adding resources to this registry through the NeuroLex, http://neurolex.org/wiki/Main_Page, please refer to https://confluence.crbs.ucsd.edu/display/NIF/Resources+and+Curation#ResourcesandCuration-IncorporatingOutsideRegistriesandAccommodatingTheirTags.

You can receive support in using these tools by writing to the GO helpdesk, http://www.geneontology.org/GO.contacts.shtml

Categories include:

  • Ontology or annotation browser
  • Ontology or annotation search engine
  • Ontology or annotation visualization
  • Ontology or annotation editor
  • Database or data warehouse
  • Software library
  • Statistical analysis
  • Slimmer-type tool
  • Term enrichment
  • Text mining
  • Protein interactions
  • Functional similarity
  • Semantic similarity
  • Other analysis

The tools listings are currently being updated to provide users with more information. Please fill out the GO tool submission form if you would like your tool to be displayed in the tools collection on the GO website.

A list of useful ID mapping tools is also maintained on the GO wiki.
Abbreviation: GO Tools
Parent Organization: Resource:GO
Resource Type(s): Software repository, Catalog
Resource: Resource
URL: http://www.geneontology.org/GO.tools.shtml
Alt. URL(s): https://neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_146273-1
*Id: nlx_146273
Listed By: Resource:NIF Data Federation
Availability: The community can contribute to this resource, Acknowledgement required, Free, Public
Keywords: Registry, annotation browser, annotation search engine, annotation visualization, Ontology, annotation editor, Database, data warehouse, Software library, Statistical analysis, Slimmer-type tool, Term enrichment, Text mining, Protein interaction, Functional similarity, Semantic similarity, analysis, annotation, visualization, editor
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:Gene Ontology Tools

Resource:APID: Agile Protein Interaction DataAnalyzer, Resource:AmiGO, Resource:Avadis, Resource:Babelomics, Resource:BiNGO: A Biological Networks Gene Ontology tool, Resource:BioPerl, Resource:Bioconductor, Resource:Blast2GO, Resource:Blip: Biomedical Logic Programming, Resource:CGAP GO Browser, Resource:CLASSIFI - Cluster Assignment for Biological Inference, Resource:CLENCH, Resource:COBrA, Resource:Candidate Genes to Inherited Diseases, Resource:CateGOrizer, Resource:ClueGO, Resource:Comparative Toxicogenomics Database, Resource:DBD - Slim Gene Ontology, Resource:Database for Annotation Visualization and Integrated Discovery, Resource:DynGO, Resource:EASE: the Expression Analysis Systematic Explorer, Resource:EGAN: Exploratory Gene Association Networks, Resource:ErmineJ, Resource:Expression Profiler, Resource:FIVA - Functional Information Viewer and Analyzer, Resource:FSST - Functional Similarity Search Tool, Resource:FastSemSim, Resource:Flash Gviewer, Resource:FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products, Resource:FunCluster, Resource:FunNet - Transcriptional Networks Analysis, Resource:FunSimMat, Resource:FunSpec, Resource:FuncAssociate: The Gene Set Functionator, Resource:FuncExpression, Resource:G-SESAME - Gene Semantic Similarity Analysis and Measurement Tools, Resource:G:Profiler, Resource:GARBAN, Resource:GFINDer: Genome Function INtegrated Discoverer, Resource:GO Online SQL Environment (GOOSE), Resource:GO-Module, Resource:GOALIE, Resource:GOArray, Resource:GOChase, Resource:GOEAST - Gene Ontology Enrichment Analysis Software Toolkit, Resource:GOEx - Gene Ontology Explorer, Resource:GOHyperGAll, Resource:GOMO - Gene Ontology for Motifs, Resource:GONUTS, Resource:GOProfiler … further results

Curation status: Curated

For Resource Owners:

A sitemap will keep your NIF Registry description up-to-date and inform search engines about your resource.

Please login to create the sitemap. (top right)

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Proudly proclaim your inclusion in NIF by displaying the "Registered with NIF" button on your site.

Notes

This page uses this default form:Resource

Download All GO Tools

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Download Ontology or annotation browser Tools

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Ontology or annotation browser: Table View

Is part of DefiningCitation ExampleImage
Resource:AmiGO Resource:GO http://amigo.geneontology.org/ AmiGO.PNG
Resource:Bioconductor Resource:Fred Hutchinson Cancer Research Center http://www.bioconductor.org/ Bioconductor.PNG
Resource:CGAP GO Browser Resource:Cancer Genome Anatomy Project http://cgap.nci.nih.gov/Genes/GOBrowser Capture.PNG
Resource:COBrA University of Edinburgh; Scotland; United Kingdom http://www.xspan.org/ COBrA.PNG
Resource:Comparative Toxicogenomics Database Resource:Mount Desert Island Biological Laboratory
North Carolina State University; North Carolina; USA
http://ctdbase.org/ CTD.PNG
Resource:DynGO Georgetown University Medical Center; Washington D.C.; USA
Resource:Softpedia
http://www.softpedia.com/get/Science-CAD/DynGO.shtml DynGO.PNG
Resource:GONUTS Resource:EcoliHub http://gowiki.tamu.edu/wiki/ GONUTS.PNG
Resource:GOProfiler Resource:AgBase http://agbase.msstate.edu/cgi-bin/tools/goprofiler_select.pl GOProfiler.PNG
Resource:GOSlimViewer Resource:AgBase http://agbase.msstate.edu/cgi-bin/tools/goslimviewer_select.pl GOSlimViewer.PNG
Resource:GOblet Max Planck Institute for Molecular Genetics; Berlin; Germany http://goblet.molgen.mpg.de/cgi-bin/goblet2008/goblet.cgi GOblet.PNG
Resource:GOfetcher University of Southern Mississippi; Mississippi; USA http://mcbc.usm.edu/gofetcher/
Resource:GenNav National Library of Medicine http://mor.nlm.nih.gov/perl/gennav.pl GenNav.PNG
Resource:Gene Class Expression University of Sao Paulo; Sao Paulo; Brazil http://gdm.fmrp.usp.br/tools_bit.php
Resource:Gene Ontology Browsing Utility (GOBU) Academia Sinica; Taipei; Taiwan http://bc02.iis.sinica.edu.tw/gobu/manual/index.html GOBU.PNG
Resource:Gene Ontology For Functional Analysis (GOFFA) Resource:National Center for Toxicological Research http://www.fda.gov/ScienceResearch/BioinformaticsTools/Arraytrack/default.htm ArrayTrack.PNG
Resource:GeneInfoViz University of Tennessee Health Science Center; Tennessee; USA http://genenet2.uthsc.edu/geneinfoviz/search.php GeneInfoViz.PNG
Resource:GeneTools - a collection of resources for functional annotations Norwegian University of Science and Technology; Trondheim; Norway http://www.genetools.microarray.ntnu.no/common/intro.php GeneTools.PNG
Resource:GoFish University of Toronto; Ontario; Canada
Harvard Medical School; Massachusetts; USA
http://llama.mshri.on.ca/gofish/GoFishWelcome.html GoFish.PNG
Resource:MGI GO Browser Resource:MGI http://www.informatics.jax.org/searches/GO_form.shtml MGI GO Browser.PNG
Resource:Manatee J. Craig Venter Institute
University of Maryland School of Medicine; Maryland; USA
Resource:SourceForge
http://manatee.sourceforge.net/ Manatee.PNG
Resource:Network Ontology Analysis Chinese Academy of Sciences; Beijing; China http://app.aporc.org/NOA/ NOA.PNG
Resource:OBO-Edit Resource:GO http://oboedit.org/ OBO-Edit.PNG
Resource:OnEx - Ontology Evolution Explorer University of Leipzig; Saxony; Germany http://dbserv2.informatik.uni-leipzig.de:8080/onex/ OnEX.PNG
Resource:Onto-Compare Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Compare Onto-Compare.PNG
Resource:Onto-Design Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Design Onto-Design.PNG
Resource:Onto-Express Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Express OE.PNG
Resource:OntoVisT Jawaharlal Nehru University; New Delhi; India http://ccbb.jnu.ac.in/OntoVisT.html OntoVisT.PNG
Resource:Ontology Lookup Service Resource:European Bioinformatics Institute http://www.ebi.ac.uk/ontology-lookup/ OLS.PNG
Resource:Pandora - Protein ANnotation Diagram ORiented Analysis Hebrew University of Jerusalem; Jerusalem; Israel http://www.pandora.cs.huji.ac.il/ Pandora.PNG
Resource:QuickGO Resource:European Bioinformatics Institute http://www.ebi.ac.uk/QuickGO/ QuickGO.PNG
Resource:STRAP Boston University School of Medicine; Massachusetts; USA http://www.bumc.bu.edu/cardiovascularproteomics/cpctools/strap/ STRAP.PNG
Resource:TAIR Keyword Browser Resource:TAIR http://www.arabidopsis.org/servlets/Search?type=keyword&action=new_search TAIR Keyword Browser.PNG
Resource:Tk-GO Resource:Illumina
Resource:GitHub
https://github.com/manveru/tkgo TkGo.PNG
Resource:Wandora Grip Studios Interactive http://www.wandora.org/wandora/wiki/index.php?title=Main_Page Wandora.PNG
Resource:agriGO China Agricultural University; Beijing; China http://bioinfo.cau.edu.cn/agriGO/ AgriGO.PNG

Download Ontology or annotation search engine Tools

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Ontology or annotation search engine: Table View

Is part of DefiningCitation ExampleImage
Resource:AmiGO Resource:GO http://amigo.geneontology.org/ AmiGO.PNG
Resource:Bioconductor Resource:Fred Hutchinson Cancer Research Center http://www.bioconductor.org/ Bioconductor.PNG
Resource:GONUTS Resource:EcoliHub http://gowiki.tamu.edu/wiki/ GONUTS.PNG
Resource:GORetriever Resource:AgBase http://agbase.msstate.edu/cgi-bin/tools/goretriever_select.pl GORetriever.PNG
Resource:GOTaxExplorer Max-Planck-Institute for Informatics; Saarbrucken; Germany http://www.gotaxexplorer.de/ GOTaxExplorer.PNG
Resource:GOanna Resource:AgBase http://www.agbase.msstate.edu/cgi-bin/tools/GOanna.cgi GOanna.PNG
Resource:Gene Ontology For Functional Analysis (GOFFA) Resource:National Center for Toxicological Research http://www.fda.gov/ScienceResearch/BioinformaticsTools/Arraytrack/default.htm ArrayTrack.PNG
Resource:GeneTools - a collection of resources for functional annotations Norwegian University of Science and Technology; Trondheim; Norway http://www.genetools.microarray.ntnu.no/common/intro.php GeneTools.PNG
Resource:MGI GO Browser Resource:MGI http://www.informatics.jax.org/searches/GO_form.shtml MGI GO Browser.PNG
Resource:OBO-Edit Resource:GO http://oboedit.org/ OBO-Edit.PNG
Resource:Onto-Compare Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Compare Onto-Compare.PNG
Resource:Onto-Design Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Design Onto-Design.PNG
Resource:Onto-Express Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Express OE.PNG
Resource:Onto-Miner Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Miner OM.PNG
Resource:OntoVisT Jawaharlal Nehru University; New Delhi; India http://ccbb.jnu.ac.in/OntoVisT.html OntoVisT.PNG
Resource:Ontology Lookup Service Resource:European Bioinformatics Institute http://www.ebi.ac.uk/ontology-lookup/ OLS.PNG
Resource:PiNGO Ghent University; Ghent; Belgium http://www.psb.ugent.be/esb/PiNGO/ PiNGO.PNG
Resource:QuickGO Resource:European Bioinformatics Institute http://www.ebi.ac.uk/QuickGO/ QuickGO.PNG
Resource:RamiGO Resource:Dana-Farber Cancer Institute
Resource:Bioconductor
http://bioconductor.org/packages/2.9/bioc/html/RamiGO.html RamiGO.PNG

Download Ontology or annotation visualization Tools

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Ontology or annotation visualization: Table View

Is part of DefiningCitation ExampleImage
Resource:AmiGO Resource:GO http://amigo.geneontology.org/ AmiGO.PNG
Resource:Bioconductor Resource:Fred Hutchinson Cancer Research Center http://www.bioconductor.org/ Bioconductor.PNG
Resource:Flash Gviewer Medical College of Wisconsin; Wisconsin; USA http://gmod.org/wiki/Flash_GViewer Flash GViewer.PNG
Resource:G:Profiler Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/gprofiler/ G Profiler.PNG
Resource:GO-Module University of Illinois at Chicago; Illinois; USA http://lussierlab.org/GO-Module/GOModule.cgi GO-Module.PNG
Resource:GOTaxExplorer Max-Planck-Institute for Informatics; Saarbrucken; Germany http://www.gotaxexplorer.de/ GOTaxExplorer.PNG
Resource:GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool Weizmann Institute of Science; Rehovot; Israel http://cbl-gorilla.cs.technion.ac.il/ GOrilla.PNG
Resource:Gene Ontology Browsing Utility (GOBU) Academia Sinica; Taipei; Taiwan http://bc02.iis.sinica.edu.tw/gobu/manual/index.html GOBU.PNG
Resource:Gene Ontology For Functional Analysis (GOFFA) Resource:National Center for Toxicological Research http://www.fda.gov/ScienceResearch/BioinformaticsTools/Arraytrack/default.htm ArrayTrack.PNG
Resource:GeneTools - a collection of resources for functional annotations Norwegian University of Science and Technology; Trondheim; Norway http://www.genetools.microarray.ntnu.no/common/intro.php GeneTools.PNG
Resource:Generic GO Term Finder Princeton University; New Jersey; USA
Resource:Comprehensive Perl Archive Network
http://go.princeton.edu/cgi-bin/GOTermFinder GOTermFinder.PNG
Resource:GraphWeb Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/graphweb/ GraphWeb.PNG
Resource:MGI GO Browser Resource:MGI http://www.informatics.jax.org/searches/GO_form.shtml MGI GO Browser.PNG
Resource:OBO-Edit Resource:GO http://oboedit.org/ OBO-Edit.PNG
Resource:Onto-Compare Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Compare Onto-Compare.PNG
Resource:Onto-Design Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Design Onto-Design.PNG
Resource:Onto-Express Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Express OE.PNG
Resource:OntoVisT Jawaharlal Nehru University; New Delhi; India http://ccbb.jnu.ac.in/OntoVisT.html OntoVisT.PNG
Resource:QuickGO Resource:European Bioinformatics Institute http://www.ebi.ac.uk/QuickGO/ QuickGO.PNG
Resource:REViGO Rudjer Boskovic Institute; Zagreb; Croatia http://revigo.irb.hr/ REViGO.PNG
Resource:RamiGO Resource:Dana-Farber Cancer Institute
Resource:Bioconductor
http://bioconductor.org/packages/2.9/bioc/html/RamiGO.html RamiGO.PNG
Resource:STRAP Boston University School of Medicine; Massachusetts; USA http://www.bumc.bu.edu/cardiovascularproteomics/cpctools/strap/ STRAP.PNG
Resource:StRAnGER Resource:National Hellenic Research Foundation http://www.grissom.gr/stranger/ StRAnGER.PNG
Resource:WEGO - Web Gene Ontology Annotation Plot Beijing Genomics Institute; Shenzhen; China http://wego.genomics.org.cn/cgi-bin/wego/index.pl WEGO.PNG
Resource:agriGO China Agricultural University; Beijing; China http://bioinfo.cau.edu.cn/agriGO/ AgriGO.PNG

Download Ontology or annotation editor Tools

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Ontology or annotation editor: Table View

Is part of DefiningCitation ExampleImage
Resource:Blast2GO Resource:Principe Felipe Research Centre; Valencia; Spain http://www.blast2go.com/b2ghome B2G.PNG
Resource:GOMO - Gene Ontology for Motifs University of Queensland; Brisbane; Australia
Resource:MEME Suite - Motif-based sequence analysis tools
http://meme.nbcr.net/meme/cgi-bin/gomo.cgi GOMO.PNG
Resource:GONUTS Resource:EcoliHub http://gowiki.tamu.edu/wiki/ GONUTS.PNG
Resource:GOanna Resource:AgBase http://www.agbase.msstate.edu/cgi-bin/tools/GOanna.cgi GOanna.PNG
Resource:InterProScan Resource:European Bioinformatics Institute http://www.ebi.ac.uk/Tools/pfa/iprscan/ InterProScan.PNG
Resource:Manatee J. Craig Venter Institute
University of Maryland School of Medicine; Maryland; USA
Resource:SourceForge
http://manatee.sourceforge.net/ Manatee.PNG
Resource:OBO-Edit Resource:GO http://oboedit.org/ OBO-Edit.PNG
Resource:PubSearch Resource:TAIR
Stanford University; California; USA
http://pubsearch.stanford.edu/ PubSearch.PNG

Download Database or data warehouse Tools

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Database or data warehouse: Table View

Is part of DefiningCitation ExampleImage
Resource:Bioconductor Resource:Fred Hutchinson Cancer Research Center http://www.bioconductor.org/ Bioconductor.PNG
Resource:DBD - Slim Gene Ontology Resource:Db for Dummies! http://www.dbfordummies.com/go.asp Slim Gene Ontology.PNG
Resource:FunSimMat Max-Planck-Institute for Informatics; Saarbrucken; Germany http://funsimmat.bioinf.mpi-inf.mpg.de FunSimMat.PNG
Resource:GO Online SQL Environment (GOOSE) Resource:AmiGO
Resource:Berkeley Bioinformatics Open-Source Projects
http://www.berkeleybop.org/goose/ GOOSE.PNG
Resource:GOTaxExplorer Max-Planck-Institute for Informatics; Saarbrucken; Germany http://www.gotaxexplorer.de/ GOTaxExplorer.PNG
Resource:Gene Ontology For Functional Analysis (GOFFA) Resource:National Center for Toxicological Research http://www.fda.gov/ScienceResearch/BioinformaticsTools/Arraytrack/default.htm ArrayTrack.PNG
Resource:GeneMANIA University of Toronto; Ontario; Canada http://genemania.org/ GeneMANIA.PNG
Resource:GeneTools - a collection of resources for functional annotations Norwegian University of Science and Technology; Trondheim; Norway http://www.genetools.microarray.ntnu.no/common/intro.php GeneTools.PNG
Resource:Onto-Compare Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Compare Onto-Compare.PNG
Resource:Onto-Design Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Design Onto-Design.PNG
Resource:Onto-Express Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Express OE.PNG
Resource:Onto-Miner Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Miner OM.PNG
Resource:Onto-Translate Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Translate Onto-Translate.PNG
Resource:QuickGO Resource:European Bioinformatics Institute http://www.ebi.ac.uk/QuickGO/ QuickGO.PNG
Resource:ToppGene Suite Cincinnati Childrens Hospital Medical Center; Ohio; USA http://toppgene.cchmc.org/ ToppGene Suite.PNG
Resource:agriGO China Agricultural University; Beijing; China http://bioinfo.cau.edu.cn/agriGO/ AgriGO.PNG
Resource:go-db-perl Resource:Comprehensive Perl Archive Network
Resource:GO
http://search.cpan.org/~cmungall/go-db-perl/ Go-db-perl.PNG

Download Software library Tools

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Software library: Table View

Is part of DefiningCitation ExampleImage
Resource:BioPerl Duke University; North Carolina; USA
Resource:European Bioinformatics Institute
http://www.bioperl.org BioPerl.PNG
Resource:Bioconductor Resource:Fred Hutchinson Cancer Research Center http://www.bioconductor.org/ Bioconductor.PNG
Resource:Blip: Biomedical Logic Programming Resource:Berkeley Bioinformatics Open-Source Projects http://www.blipkit.org/ Blip.PNG
Resource:FastSemSim University of Padua; Padua; Italy
Resource:SourceForge
http://sourceforge.net/p/fastsemsim/home/Home/ FastSemSim.PNG
Resource:Gene Ontology Browsing Utility (GOBU) Academia Sinica; Taipei; Taiwan http://bc02.iis.sinica.edu.tw/gobu/manual/index.html GOBU.PNG
Resource:GeneMANIA University of Toronto; Ontario; Canada http://genemania.org/ GeneMANIA.PNG
Resource:LexGrid National Cancer Institute
Resource:European Bioinformatics Institute
https://wiki.nci.nih.gov/display/LexEVS/LexGrid LexGrid.PNG
Resource:OBO-Edit Resource:GO http://oboedit.org/ OBO-Edit.PNG
Resource:ONTO-PERL Resource:Comprehensive Perl Archive Network
Norwegian University of Science and Technology; Trondheim; Norway
http://search.cpan.org/dist/ONTO-PERL/ ONTO-PERL.PNG
Resource:OWL API University of Manchester; Manchester; United Kingdom
Resource:SourceForge
http://owlapi.sourceforge.net/ OWL API.PNG
Resource:OWLTools Resource:GO
Resource:Google Project Hosting
http://code.google.com/p/owltools/ OWLTools.PNG
Resource:go-db-perl Resource:Comprehensive Perl Archive Network
Resource:GO
http://search.cpan.org/~cmungall/go-db-perl/ Go-db-perl.PNG
Resource:go-moose Resource:SourceForge
Resource:Berkeley Bioinformatics Open-Source Projects
Lawrence Berkeley National Laboratory
http://geneontology.svn.sourceforge.net/viewvc/geneontology/go-moose/ Go-moose.PNG
Resource:go-perl Resource:Comprehensive Perl Archive Network
Resource:GO
http://search.cpan.org/~cmungall/go-perl/ Go-perl.PNG

Download Statistical analysis Tools

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Statistical analysis: Table View

Is part of DefiningCitation ExampleImage
Resource:Avadis Strand Scientific Intelligence http://www.avadis-ngs.com Avadis.PNG
Resource:Babelomics Resource:CIPF Bioinformatics and Genomics Department http://babelomics.bioinfo.cipf.es Babelomics.PNG
Resource:BiNGO: A Biological Networks Gene Ontology tool Ghent University; Ghent; Belgium http://www.psb.ugent.be/cbd/papers/BiNGO/Home.html BiNGO.PNG
Resource:Bioconductor Resource:Fred Hutchinson Cancer Research Center http://www.bioconductor.org/ Bioconductor.PNG
Resource:Blast2GO Resource:Principe Felipe Research Centre; Valencia; Spain http://www.blast2go.com/b2ghome B2G.PNG
Resource:CLASSIFI - Cluster Assignment for Biological Inference Resource:UT Southwestern Medical Center Department of Pathology http://www.utsouthwestern.edu/education/medical-school/departments/pathology/pathdb/classifi.html
Resource:CLENCH Resource:Stanford Center for Biomedical Informatics Research http://www.stanford.edu/~nigam/cgi-bin/dokuwiki/doku.php?id=clench CLENCH.PNG
Resource:CateGOrizer Resource:NAGRP Bioinformatics Coordination Program http://www.animalgenome.org/bioinfo/tools/catego/ CateGOrizer.PNG
Resource:ClueGO National Institute of Health and Medical Research; Rennes; France http://www.ici.upmc.fr/cluego/ ClueGO.PNG
Resource:EASE: the Expression Analysis Systematic Explorer Resource:Database for Annotation Visualization and Integrated Discovery http://david.abcc.ncifcrf.gov/content.jsp?file=/ease/ease1.htm&type=1 EASE.PNG
Resource:ErmineJ University of British Columbia; British Columbia; Canada
Columbia University; New York; USA
http://bioinformatics.ubc.ca/ermineJ/ ErmineJ.PNG
Resource:FIVA - Functional Information Viewer and Analyzer Resource:MolGen http://bioinformatics.biol.rug.nl/standalone/fiva/ FIVA.PNG
Resource:FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products University of Lisbon; Lisbon; Portugal http://xldb.fc.ul.pt/biotools/rebil/ssm/ FuSSiMeG.PNG
Resource:FunCluster Resource:Cordelier Research Center http://corneliu.henegar.info/FunCluster.htm FunCluster.PNG
Resource:FunNet - Transcriptional Networks Analysis Resource:Cordelier Research Center http://www.funnet.info/ FunNet.PNG
Resource:FunSpec University of Toronto; Ontario; Canada http://funspec.med.utoronto.ca/ FunSpec.PNG
Resource:FuncAssociate: The Gene Set Functionator Resource:Roth Laboratory http://llama.mshri.on.ca/funcassociate/ FuncAssociate.PNG
Resource:FuncExpression Iowa State University; Iowa; USA http://www.plexdb.org/plex.php?database=Barley/funcexpression.php
Resource:G:Profiler Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/gprofiler/ G Profiler.PNG
Resource:GARBAN http://www.garban.org/garban/home.php
Resource:GFINDer: Genome Function INtegrated Discoverer Polytechnic University of Milan; Milan; Italy http://www.medinfopoli.polimi.it/GFINDer/ GFINDer.PNG
Resource:GOALIE Resource:NYU Bioinformatics Group http://bioinformatics.nyu.edu/Projects/GOALIE/ GOALIE.PNG
Resource:GOArray Yale School of Medicine; Connecticut; USA http://goarray.med.yale.edu/GOArray/ GOArray.PNG
Resource:GOEAST - Gene Ontology Enrichment Analysis Software Toolkit Chinese Academy of Sciences; Beijing; China http://omicslab.genetics.ac.cn/GOEAST/ GOEAST.PNG
Resource:GOEx - Gene Ontology Explorer Resource:TSRI-Yates Lab http://pcarvalho.com/patternlab/goex.shtml GOEx.PNG
Resource:GOHyperGAll University of California at Riverside; California; USA http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual#GOHyperGAll GOHyperGAll.PNG
Resource:GOMO - Gene Ontology for Motifs University of Queensland; Brisbane; Australia
Resource:MEME Suite - Motif-based sequence analysis tools
http://meme.nbcr.net/meme/cgi-bin/gomo.cgi GOMO.PNG
Resource:GOToolBox Functional Investigation of Gene Datasets Center for Genomic Regulation; Barcelona; Spain http://genome.crg.es/GOToolBox/ GOToolBox.PNG
Resource:GOdist Hebrew University of Jerusalem; Jerusalem; Israel http://basalganglia.huji.ac.il/links.htm GOdist.PNG
Resource:GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool Weizmann Institute of Science; Rehovot; Israel http://cbl-gorilla.cs.technion.ac.il/ GOrilla.PNG
Resource:GOstat Walter and Eliza Hall Institute of Medical Research; Victoria; Australia http://gostat.wehi.edu.au GOstat.PNG
Resource:GOtcha University of Dundee; Scotland; United Kingdom http://www.compbio.dundee.ac.uk/Software/GOtcha/gotcha.html GOtcha.PNG
Resource:Gene Ontology Browsing Utility (GOBU) Academia Sinica; Taipei; Taiwan http://bc02.iis.sinica.edu.tw/gobu/manual/index.html GOBU.PNG
Resource:GeneCodis Spanish National Research Council; Madrid; Spain http://genecodis.cnb.csic.es/ GeneCodis.PNG
Resource:GeneMANIA University of Toronto; Ontario; Canada http://genemania.org/ GeneMANIA.PNG
Resource:GeneMerge Harvard University; Massachusetts; USA http://www.oeb.harvard.edu/faculty/hartl/old_site/lab/publications/GeneMerge.html GeneMerge.PNG
Resource:GeneTools - a collection of resources for functional annotations Norwegian University of Science and Technology; Trondheim; Norway http://www.genetools.microarray.ntnu.no/common/intro.php GeneTools.PNG
Resource:GoSurfer University of Illinois at Urbana-Champaign; Illinois; USA
Harvard School of Public Health; Massachusetts; USA
http://bioinformatics.bioen.illinois.edu/gosurfer/index.htm GoSurfer.PNG
Resource:GraphWeb Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/graphweb/ GraphWeb.PNG
Resource:InterProScan Resource:European Bioinformatics Institute http://www.ebi.ac.uk/Tools/pfa/iprscan/ InterProScan.PNG
Resource:L2L Microarray Analysis Tool University of Washington; Washington; USA http://depts.washington.edu/l2l/about.html L2L.PNG
Resource:MAPPFinder University of California at San Francisco; California; USA
Resource:Gene Map Annotator and Pathway Profiler
http://www.genmapp.org/help_v2/UsingMAPPFinder.htm MAPPFinder.PNG
Resource:MetaGeneProfiler Institute of Statistical Mathematics; Tokyo; Japan http://metagp.ism.ac.jp/ MetaGP.PNG
Resource:Network Ontology Analysis Chinese Academy of Sciences; Beijing; China http://app.aporc.org/NOA/ NOA.PNG
Resource:Onto-Express Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Express OE.PNG
Resource:Onto-Express To Go (OE2GO) Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#OE2GO OE2GO.PNG
Resource:OntoGate Max-Planck-Institute for Informatics; Saarbrucken; Germany http://functionalgenomics.de/ontogate/ OntoGate.PNG
Resource:Ontologizer Charite - Universitatsmedizin Berlin; Berlin; Germany http://compbio.charite.de/contao/index.php/ontologizer2.html Ontologizer.PNG
Resource:PiNGO Ghent University; Ghent; Belgium http://www.psb.ugent.be/esb/PiNGO/ PiNGO.PNG
Resource:ProbeExplorer University of Salamanca; Salamanca; Spain http://probeexplorer.cicancer.org/principal.php ProbeExplorer.PNG
Resource:ProfCom - Profiling of complex functionality Institute of Bioinformatics and Systems Biology; Neuherberg; Germany http://webclu.bio.wzw.tum.de/profcom/ ProfCom.PNG
Resource:ProteInOn University of Lisbon; Lisbon; Portugal ProteInOn.PNG
Resource:REViGO Rudjer Boskovic Institute; Zagreb; Croatia http://revigo.irb.hr/ REViGO.PNG
Resource:SGD Gene Ontology Slim Mapper Resource:SGD http://www.yeastgenome.org/cgi-bin/GO/goSlimMapper.pl GO Slim Mapper.PNG
Resource:SOURCE Resource:SMD http://smd.stanford.edu/cgi-bin/source/sourceSearch SOURCE.PNG
Resource:SeqExpress http://www.seqexpress.com/ SeqExpress.PNG
Resource:SerbGO University of Barcelona; Barcelona; Spain http://estbioinfo.stat.ub.es/apli/serbgov131/index.php SerbGO.PNG
Resource:Short Time-series Expression Miner (STEM) Carnegie Mellon University; Pennsylvania; USA http://www.cs.cmu.edu/~jernst/stem/ STEM.PNG
Resource:Spotfire TIBCO http://spotfire.tibco.com/ Spotfire.PNG
Resource:StRAnGER Resource:National Hellenic Research Foundation http://www.grissom.gr/stranger/ StRAnGER.PNG
Resource:T-profiler Columbia University; New York; USA
University of Amsterdam; Amsterdam; Netherlands
http://www.t-profiler.org T-profiler.PNG
Resource:THEA - Tools for High-throughput Experiments Analysis Resource:Virtual Biology Lab http://thea.unice.fr/index-en.html
Resource:TM4 Microarray Software Suite: TIGR MultiExperiment Viewer Resource:Dana-Farber Cancer Institute
J. Craig Venter Institute
University of Washington; Washington; USA
http://www.tm4.org/mev.html MeV.PNG
Resource:WebGestalt: WEB-based GEne SeT AnaLysis Toolkit Vanderbilt University; Tennessee; USA http://bioinfo.vanderbilt.edu/webgestalt/ WebGestalt.PNG
Resource:agriGO China Agricultural University; Beijing; China http://bioinfo.cau.edu.cn/agriGO/ AgriGO.PNG

Download Slimmer-type Tools

CSV

Slimmer-type tool: Table View

Is part of DefiningCitation ExampleImage
Resource:AmiGO Resource:GO http://amigo.geneontology.org/ AmiGO.PNG
Resource:Blast2GO Resource:Principe Felipe Research Centre; Valencia; Spain http://www.blast2go.com/b2ghome B2G.PNG
Resource:CLENCH Resource:Stanford Center for Biomedical Informatics Research http://www.stanford.edu/~nigam/cgi-bin/dokuwiki/doku.php?id=clench CLENCH.PNG
Resource:CateGOrizer Resource:NAGRP Bioinformatics Coordination Program http://www.animalgenome.org/bioinfo/tools/catego/ CateGOrizer.PNG
Resource:G:Profiler Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/gprofiler/ G Profiler.PNG
Resource:GOHyperGAll University of California at Riverside; California; USA http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual#GOHyperGAll GOHyperGAll.PNG
Resource:GOSlimViewer Resource:AgBase http://agbase.msstate.edu/cgi-bin/tools/goslimviewer_select.pl GOSlimViewer.PNG
Resource:GOToolBox Functional Investigation of Gene Datasets Center for Genomic Regulation; Barcelona; Spain http://genome.crg.es/GOToolBox/ GOToolBox.PNG
Resource:GeneMerge Harvard University; Massachusetts; USA http://www.oeb.harvard.edu/faculty/hartl/old_site/lab/publications/GeneMerge.html GeneMerge.PNG
Resource:Generic GO Term Mapper Princeton University; New Jersey; USA http://go.princeton.edu/cgi-bin/GOTermMapper GO Term Mapper.PNG
Resource:QuickGO Resource:European Bioinformatics Institute http://www.ebi.ac.uk/QuickGO/ QuickGO.PNG
Resource:SGD Gene Ontology Slim Mapper Resource:SGD http://www.yeastgenome.org/cgi-bin/GO/goSlimMapper.pl GO Slim Mapper.PNG
Resource:ToppGene Suite Cincinnati Childrens Hospital Medical Center; Ohio; USA http://toppgene.cchmc.org/ ToppGene Suite.PNG
Resource:go-moose Resource:SourceForge
Resource:Berkeley Bioinformatics Open-Source Projects
Lawrence Berkeley National Laboratory
http://geneontology.svn.sourceforge.net/viewvc/geneontology/go-moose/ Go-moose.PNG
Resource:go-perl Resource:Comprehensive Perl Archive Network
Resource:GO
http://search.cpan.org/~cmungall/go-perl/ Go-perl.PNG

Download Term enrichment Tools

CSV

Term enrichment: Table View

Is part of DefiningCitation ExampleImage
Resource:AmiGO Resource:GO http://amigo.geneontology.org/ AmiGO.PNG
Resource:BiNGO: A Biological Networks Gene Ontology tool Ghent University; Ghent; Belgium http://www.psb.ugent.be/cbd/papers/BiNGO/Home.html BiNGO.PNG
Resource:Bioconductor Resource:Fred Hutchinson Cancer Research Center http://www.bioconductor.org/ Bioconductor.PNG
Resource:Database for Annotation Visualization and Integrated Discovery Resource:NCI-Frederick http://david.abcc.ncifcrf.gov/ DAVID.PNG
Resource:ErmineJ University of British Columbia; British Columbia; Canada
Columbia University; New York; USA
http://bioinformatics.ubc.ca/ermineJ/ ErmineJ.PNG
Resource:FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products University of Lisbon; Lisbon; Portugal http://xldb.fc.ul.pt/biotools/rebil/ssm/ FuSSiMeG.PNG
Resource:G:Profiler Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/gprofiler/ G Profiler.PNG
Resource:GOblet Max Planck Institute for Molecular Genetics; Berlin; Germany http://goblet.molgen.mpg.de/cgi-bin/goblet2008/goblet.cgi GOblet.PNG
Resource:GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool Weizmann Institute of Science; Rehovot; Israel http://cbl-gorilla.cs.technion.ac.il/ GOrilla.PNG
Resource:GREAT: Genomic Regions Enrichment of Annotations Tool Stanford University School of Medicine; California; USA http://great.stanford.edu/public/html/splash.php GREAT.PNG
Resource:Gene Ontology Browsing Utility (GOBU) Academia Sinica; Taipei; Taiwan http://bc02.iis.sinica.edu.tw/gobu/manual/index.html GOBU.PNG
Resource:Gene Ontology For Functional Analysis (GOFFA) Resource:National Center for Toxicological Research http://www.fda.gov/ScienceResearch/BioinformaticsTools/Arraytrack/default.htm ArrayTrack.PNG
Resource:GeneMANIA University of Toronto; Ontario; Canada http://genemania.org/ GeneMANIA.PNG
Resource:GeneMerge Harvard University; Massachusetts; USA http://www.oeb.harvard.edu/faculty/hartl/old_site/lab/publications/GeneMerge.html GeneMerge.PNG
Resource:GeneTools - a collection of resources for functional annotations Norwegian University of Science and Technology; Trondheim; Norway http://www.genetools.microarray.ntnu.no/common/intro.php GeneTools.PNG
Resource:Generic GO Term Finder Princeton University; New Jersey; USA
Resource:Comprehensive Perl Archive Network
http://go.princeton.edu/cgi-bin/GOTermFinder GOTermFinder.PNG
Resource:Generic GO Term Mapper Princeton University; New Jersey; USA http://go.princeton.edu/cgi-bin/GOTermMapper GO Term Mapper.PNG
Resource:GoBean: a Java application for Gene Ontology enrichment analysis Gachon University of Medicine and Science; Incheon; South Korea http://neon.gachon.ac.kr/GoBean/ GoBean.PNG
Resource:GraphWeb Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/graphweb/ GraphWeb.PNG
Resource:High-Throughput GoMiner National Cancer Institute http://discover.nci.nih.gov/gominer/GoCommandWebInterface.jsp High-Throughput GoMiner.PNG
Resource:Network Ontology Analysis Chinese Academy of Sciences; Beijing; China http://app.aporc.org/NOA/ NOA.PNG
Resource:Onto-Express Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Express OE.PNG
Resource:Onto-Express To Go (OE2GO) Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#OE2GO OE2GO.PNG
Resource:PiNGO Ghent University; Ghent; Belgium http://www.psb.ugent.be/esb/PiNGO/ PiNGO.PNG
Resource:ProteInOn University of Lisbon; Lisbon; Portugal ProteInOn.PNG
Resource:Short Time-series Expression Miner (STEM) Carnegie Mellon University; Pennsylvania; USA http://www.cs.cmu.edu/~jernst/stem/ STEM.PNG
Resource:StRAnGER Resource:National Hellenic Research Foundation http://www.grissom.gr/stranger/ StRAnGER.PNG
Resource:ToppGene Suite Cincinnati Childrens Hospital Medical Center; Ohio; USA http://toppgene.cchmc.org/ ToppGene Suite.PNG
Resource:agriGO China Agricultural University; Beijing; China http://bioinfo.cau.edu.cn/agriGO/ AgriGO.PNG

Download Text mining Tools

CSV

Text mining: Table View

Is part of DefiningCitation ExampleImage
Resource:Avadis Strand Scientific Intelligence http://www.avadis-ngs.com Avadis.PNG
Resource:Babelomics Resource:CIPF Bioinformatics and Genomics Department http://babelomics.bioinfo.cipf.es Babelomics.PNG
Resource:Bioconductor Resource:Fred Hutchinson Cancer Research Center http://www.bioconductor.org/ Bioconductor.PNG
Resource:Database for Annotation Visualization and Integrated Discovery Resource:NCI-Frederick http://david.abcc.ncifcrf.gov/ DAVID.PNG
Resource:Gene Ontology For Functional Analysis (GOFFA) Resource:National Center for Toxicological Research http://www.fda.gov/ScienceResearch/BioinformaticsTools/Arraytrack/default.htm ArrayTrack.PNG
Resource:GeneMerge Harvard University; Massachusetts; USA http://www.oeb.harvard.edu/faculty/hartl/old_site/lab/publications/GeneMerge.html GeneMerge.PNG
Resource:GoAnnotator University of Lisbon; Lisbon; Portugal http://xldb.fc.ul.pt/biotools/rebil/goa/ GoAnnotator.PNG
Resource:TXTGate Catholic University of Leuven; Flemish Brabant; Belgium http://tomcat.esat.kuleuven.be/txtgate/ TXTGate.PNG
Resource:agriGO China Agricultural University; Beijing; China http://bioinfo.cau.edu.cn/agriGO/ AgriGO.PNG

Download Protein interaction Tools

CSV

Protein interactions: Table View

Is part of DefiningCitation ExampleImage
Resource:APID: Agile Protein Interaction DataAnalyzer University of Salamanca; Salamanca; Spain http://bioinfow.dep.usal.es/apid APID.PNG
Resource:G:Profiler Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/gprofiler/ G Profiler.PNG
Resource:GeneMANIA University of Toronto; Ontario; Canada http://genemania.org/ GeneMANIA.PNG
Resource:GraphWeb Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/graphweb/ GraphWeb.PNG
Resource:ProteInOn University of Lisbon; Lisbon; Portugal ProteInOn.PNG
Resource:ToppGene Suite Cincinnati Childrens Hospital Medical Center; Ohio; USA http://toppgene.cchmc.org/ ToppGene Suite.PNG

Download Functional similarity Tools

CSV

Functional similarity: Table View

Is part of DefiningCitation ExampleImage
Resource:FastSemSim University of Padua; Padua; Italy
Resource:SourceForge
http://sourceforge.net/p/fastsemsim/home/Home/ FastSemSim.PNG
Resource:FunSimMat Max-Planck-Institute for Informatics; Saarbrucken; Germany http://funsimmat.bioinf.mpi-inf.mpg.de FunSimMat.PNG
Resource:G-SESAME - Gene Semantic Similarity Analysis and Measurement Tools Clemson University; South Carolina; USA http://bioinformatics.clemson.edu/G-SESAME/ G-SESAME.PNG
Resource:G:Profiler Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/gprofiler/ G Profiler.PNG
Resource:GO-Module University of Illinois at Chicago; Illinois; USA http://lussierlab.org/GO-Module/GOModule.cgi GO-Module.PNG
Resource:GOTaxExplorer Max-Planck-Institute for Informatics; Saarbrucken; Germany http://www.gotaxexplorer.de/ GOTaxExplorer.PNG
Resource:IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures University of Cape Town; Western Cape; South Africa http://web.cbio.uct.ac.za/ITGOM/ IT-GOM.PNG
Resource:OwlSim Resource:Berkeley Bioinformatics Open-Source Projects
Resource:OWLTools
http://owlsim.org OwlSim.PNG
Resource:PiNGO Ghent University; Ghent; Belgium http://www.psb.ugent.be/esb/PiNGO/ PiNGO.PNG
Resource:Semantic Measures Library Ecole des Mines d'Ales; Ales; France http://www.semantic-measures-library.org SMT.PNG
Resource:ToppGene Suite Cincinnati Childrens Hospital Medical Center; Ohio; USA http://toppgene.cchmc.org/ ToppGene Suite.PNG

Download Semantic similarity Tools

CSV

Semantic similarity: Table View

Is part of DefiningCitation ExampleImage
Resource:FastSemSim University of Padua; Padua; Italy
Resource:SourceForge
http://sourceforge.net/p/fastsemsim/home/Home/ FastSemSim.PNG
Resource:FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products University of Lisbon; Lisbon; Portugal http://xldb.fc.ul.pt/biotools/rebil/ssm/ FuSSiMeG.PNG
Resource:FunSimMat Max-Planck-Institute for Informatics; Saarbrucken; Germany http://funsimmat.bioinf.mpi-inf.mpg.de FunSimMat.PNG
Resource:G-SESAME - Gene Semantic Similarity Analysis and Measurement Tools Clemson University; South Carolina; USA http://bioinformatics.clemson.edu/G-SESAME/ G-SESAME.PNG
Resource:GOTaxExplorer Max-Planck-Institute for Informatics; Saarbrucken; Germany http://www.gotaxexplorer.de/ GOTaxExplorer.PNG
Resource:IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures University of Cape Town; Western Cape; South Africa http://web.cbio.uct.ac.za/ITGOM/ IT-GOM.PNG
Resource:OwlSim Resource:Berkeley Bioinformatics Open-Source Projects
Resource:OWLTools
http://owlsim.org OwlSim.PNG
Resource:ProteInOn University of Lisbon; Lisbon; Portugal ProteInOn.PNG
Resource:Semantic Measures Library Ecole des Mines d'Ales; Ales; France http://www.semantic-measures-library.org SMT.PNG

Download Other analysis Tools

CSV

Other analysis: Table View

Is part of DefiningCitation ExampleImage
Resource:AmiGO Resource:GO http://amigo.geneontology.org/ AmiGO.PNG
Resource:Bioconductor Resource:Fred Hutchinson Cancer Research Center http://www.bioconductor.org/ Bioconductor.PNG
Resource:Expression Profiler Resource:European Bioinformatics Institute http://www.ebi.ac.uk/expressionprofiler/ Expression Profiler.PNG
Resource:FSST - Functional Similarity Search Tool Max-Planck-Institute for Informatics; Saarbrucken; Germany http://www.gotaxexplorer.de/ FSST.PNG
Resource:FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products University of Lisbon; Lisbon; Portugal http://xldb.fc.ul.pt/biotools/rebil/ssm/ FuSSiMeG.PNG
Resource:G:Profiler Resource:BIIT - Bioinformatics Algorithmics and Data Mining Group http://biit.cs.ut.ee/gprofiler/ G Profiler.PNG
Resource:GO-Module University of Illinois at Chicago; Illinois; USA http://lussierlab.org/GO-Module/GOModule.cgi GO-Module.PNG
Resource:GOChase Seoul National University College of Medicine; Seoul; South Korea http://www.snubi.org/software/GOChase/ GOChase.PNG
Resource:GOTaxExplorer Max-Planck-Institute for Informatics; Saarbrucken; Germany http://www.gotaxexplorer.de/ GOTaxExplorer.PNG
Resource:GeneMANIA University of Toronto; Ontario; Canada http://genemania.org/ GeneMANIA.PNG
Resource:GoPubMed Resource:Biotechnology Center of the TU Dresden http://gopubmed.org/web/gopubmed/ GoPubMed.PNG
Resource:Onto-Compare Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Compare Onto-Compare.PNG
Resource:Onto-Design Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Design Onto-Design.PNG
Resource:Onto-Express Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Express OE.PNG
Resource:Onto-Miner Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Miner OM.PNG
Resource:Onto-Translate Wayne State University; Michigan; USA http://vortex.cs.wayne.edu/projects.htm#Onto-Translate Onto-Translate.PNG
Resource:ProteInOn University of Lisbon; Lisbon; Portugal ProteInOn.PNG
Resource:RamiGO Resource:Dana-Farber Cancer Institute
Resource:Bioconductor
http://bioconductor.org/packages/2.9/bioc/html/RamiGO.html RamiGO.PNG
Resource:ToppGene Suite Cincinnati Childrens Hospital Medical Center; Ohio; USA http://toppgene.cchmc.org/ ToppGene Suite.PNG
Resource:go-moose Resource:SourceForge
Resource:Berkeley Bioinformatics Open-Source Projects
Lawrence Berkeley National Laboratory
http://geneontology.svn.sourceforge.net/viewvc/geneontology/go-moose/ Go-moose.PNG

Contributors

Aarnaud, Akash, Bandrow, Ccdbuser



bookmark

*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:Gene Ontology ToolsRDF feed
AbbrevGO Tools  +
AltURLhttps://neuinfo.org/mynif/search.php?q=%2A&t=indexable&nif=nlx_146273-1  +
AvailabilityThe community can contribute to this resource  +, Acknowledgement required  +, Free  +, and Public  +
CurationStatuscurated  +
DefiningCitationhttp://www.geneontology.org/GO.tools.shtml  +
DefinitionCollection of tools developed by the GO Co Collection of tools developed by the GO Consortium and by third parties. Tools are listed by category (see tables below) or alphabetically and continue to be improved and expanded. Submit your GO Tool, http://www.geneontology.org/cgi-bin/add-tool.cgi. For adding resources to this registry through the NeuroLex, http://neurolex.org/wiki/Main_Page, please refer to https://confluence.crbs.ucsd.edu/display/NIF/Resources+and+Curation#ResourcesandCuration-IncorporatingOutsideRegistriesandAccommodatingTheirTags.

You can receive support in using these tools by writing to the GO helpdesk, http://www.geneontology.org/GO.contacts.shtml

Categories include:

  • Ontology or annotation browser
  • Ontology or annotation search engine
  • Ontology or annotation visualization
  • Ontology or annotation editor
  • Database or data warehouse
  • Software library
  • Statistical analysis
  • Slimmer-type tool
  • Term enrichment
  • Text mining
  • Protein interactions
  • Functional similarity
  • Semantic similarity
  • Other analysis

The tools listings are currently being updated to provide users with more information. Please fill out the GO tool submission form if you would like your tool to be displayed in the tools collection on the GO website.

A list of useful ID mapping tools is also maintained on the GO wiki.
g tools is also maintained on the GO wiki.
ExampleImageGO Tools.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleSoftware repository  +, and Catalog  +
Idnlx_146273  +
Is part ofResource:GO  +
KeywordsCatalog  +, Annotation browser  +, Annotation search engine  +, Annotation visualization  +, Ontology  +, Annotation editor  +, Database  +, Data warehouse  +, Software library  +, Statistical analysis  +, Slimmer-type tool  +, Term enrichment  +, Text mining  +, Protein interaction  +, Functional similarity  +, Semantic similarity  +, Analysis  +, Annotation  +, Visualization  +, and Editor  +
LabelResource:Gene Ontology Tools  +
ListedbyResource:NIF Data Federation  +
ModifiedDate3 September 2014  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +