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Resource:GoSurfer

Name: Resource:GoSurfer
Description: GoSurfer uses Gene Ontology (GO) information to analyze gene sets obtained from genome-wide computations or microarray analyses. GoSurfer is a graphical interactive data mining tool. It associates user input genes with GO terms and visualizes such GO terms as a hierarchical tree. Users can manipulate the tree output by various means, like setting heuristic thresholds or using statistical tests. Significantly important GO terms resulted from a statistical test can be highlighted. All related information are exportable either as texts or as graphics.


Platform: Windows compatible
Abbreviation: GoSurfer
Parent Organization: University of Illinois at Urbana-Champaign; Illinois; USA, Harvard School of Public Health; Massachusetts; USA
Resource Type(s): Software application
Resource: Resource
URL: http://bioinformatics.bioen.illinois.edu/gosurfer/index.htm
*Id: nlx_149268
PMID: PMID 15702958
Publication link: http://www.aiimjournal.com/article/PIIS0933365707001005/abstract
Related to: Resource:Gene Ontology Tools, Resource:GO
Availability: Free for academic use
Keywords: Gene, Gene Ontology, genome-wide, microarray, graph, data mining, statistical analysis, Bioinformatics, Genomics, Gene cluster, Multiple hypothesis testing, False discovery rate
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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Notes

This page uses this default form:Resource

Old URL: http://biosun1.harvard.edu/complab/gosurfer/

Alt. URL: http://www.gosurfer.org

Contributors

Aarnaud, Zaidaziz



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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:GoSurferRDF feed
AbbrevGoSurfer  +
AvailabilityFree for academic use  +
CurationStatuscurated  +
DefiningCitationhttp://bioinformatics.bioen.illinois.edu/gosurfer/index.htm  +
DefinitionGoSurfer uses Gene Ontology (GO) informati GoSurfer uses Gene Ontology (GO) information to analyze gene sets obtained from genome-wide computations or microarray analyses. GoSurfer is a graphical interactive data mining tool. It associates user input genes with GO terms and visualizes such GO terms as a hierarchical tree. Users can manipulate the tree output by various means, like setting heuristic thresholds or using statistical tests. Significantly important GO terms resulted from a statistical test can be highlighted. All related information are exportable either as texts or as graphics.


Platform: Windows compatible phics.

Platform: Windows compatible
ExampleImageGoSurfer.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleSoftware application  +
Idnlx_149268  +
Is part ofUniversity of Illinois at Urbana-Champaign; Illinois; USA  +, and Harvard School of Public Health; Massachusetts; USA  +
KeywordsGene  +, Gene Ontology  +, Genome-wide  +, Microarray  +, Graph  +, Data mining  +, Statistical analysis  +, Bioinformatics  +, Genomics  +, Gene cluster  +, Multiple hypothesis testing  +, and False discovery rate  +
LabelResource:GoSurfer  +
ModifiedDate13 July 2012  +
PMID15702958  +
Page has default formThis property is a special property in this wiki.Resource  +
PublicationLinkhttp://www.aiimjournal.com/article/PIIS0933365707001005/abstract  +
RelatedToResource:Gene Ontology Tools  +, and Resource:GO  +
SuperCategoryResource  +