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Resource:NCBI BioProject

Name: Resource:NCBI BioProject
Description: Database of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project. It is a searchable collection of complete and incomplete (in-progress) large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms. Submissions are supported by a web-based Submission Portal.

The database facilitates organization and classification of project data submitted to NCBI, EBI and DDBJ databases that captures descriptive information about research projects that result in high volume submissions to archival databases, ties together related data across multiple archives and serves as a central portal by which to inform users of data availability. BioProject records link to corresponding data stored in archival repositories.

The BioProject resource is a redesigned, expanded, replacement of the NCBI Genome Project resource. The redesign adds tracking of several data elements including more precise information about a project’s scope, material, and objectives. Genome Project identifiers are retained in the BioProject as the ID value for a record, and an Accession number has been added. Database content is exchanged with other members of the International Nucleotide Sequence Database Collaboration (INSDC).

BioProject is accessible via FTP.[1]
Other Name(s): NCBI BioProject Database
Abbreviation: BioProject
Parent Organization: Resource:NCBI
Supporting Agency: NLM
Resource Type(s): Database
Resource: Resource
URL: http://www.ncbi.nlm.nih.gov/bioproject
Id: nlx_143909
PMID: PMID 22139929
Publication link: http://nar.oxfordjournals.org/content/40/D1/D57.abstract?ijkey=0469da2e2cd8abe21201c5de9d790ce2f48a26a7&keytype2=tf_ipsecsha
Related to: Resource:3DVC, Resource:INSDC, Resource:re3data.org
Availability: The community can contribute to this resource
Address: National Center for Biotechnology Information, U.S. National Library of Medicine, 8600 Rockville Pike, Bethesda MD, 20894 USA
Keywords: Genome sequencing, Sequencing, Genotype, Phenotype, Sequence variant, Epigenetic, Gold standard or authority, Data set, genome, assembly, annotation, mapping, cellular organism, Gene mapping, Gene expression, Biological tag, Gene rearrangement, Genetic algorithm, Genetic code, Genetic genealogy
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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References

  1. Barrett T et al. (2012) BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Res 40: D57-63 PubMed

Notes

This page uses this default form:Resource

Old URL: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=genomeprj
Alt. URL: http://www.ncbi.nlm.nih.gov/genomeprj

Contributors

Aarnaud, Ccdbuser, Wawong



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Facts about Resource:NCBI BioProjectRDF feed
AbbrevBioProject  +
AddressNational Center for Biotechnology Information  +, U.S. National Library of Medicine  +, 8600 Rockville Pike  +, Bethesda MD  +, and 20894 USA  +
AvailabilityThe community can contribute to this resource  +
CommentAccess: Open
Reuse: Open
Type: Disciplinary
Deposit: Open - https://submit.ncbi.nlm.nih.gov/subs/bioproject/ for more information
(info provided by re3data.org)
CurationStatuscurated  +
DefiningCitationhttp://www.ncbi.nlm.nih.gov/bioproject  +
DefinitionDatabase of biological data related to a s Database of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project. It is a searchable collection of complete and incomplete (in-progress) large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms. Submissions are supported by a web-based Submission Portal.

The database facilitates organization and classification of project data submitted to NCBI, EBI and DDBJ databases that captures descriptive information about research projects that result in high volume submissions to archival databases, ties together related data across multiple archives and serves as a central portal by which to inform users of data availability. BioProject records link to corresponding data stored in archival repositories.

The BioProject resource is a redesigned, expanded, replacement of the NCBI Genome Project resource. The redesign adds tracking of several data elements including more precise information about a project’s scope, material, and objectives. Genome Project identifiers are retained in the BioProject as the ID value for a record, and an Accession number has been added. Database content is exchanged with other members of the International Nucleotide Sequence Database Collaboration (INSDC).

BioProject is accessible via FTP. INSDC).

BioProject is accessible via FTP.
ExampleImageBioProject.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnlx_143909  +
Is part ofResource:NCBI  +
KeywordsGenome sequencing  +, Sequencing  +, Genotype  +, Phenotype  +, Sequence variant  +, Epigenetic  +, Gold standard or authority  +, Data set  +, Genome  +, Assembly  +, Annotation  +, Mapping  +, Cellular organism  +, Gene mapping  +, Gene expression  +, Biological tag  +, Gene rearrangement  +, Genetic algorithm  +, Genetic code  +, and Genetic genealogy  +
LabelResource:NCBI BioProject  +
ModifiedDate26 June 2014  +
PMID22139929  +
Page has default formThis property is a special property in this wiki.Resource  +
PublicationLinkhttp://nar.oxfordjournals.org/content/40/D1/D57.abstract?ijkey=0469da2e2cd8abe21201c5de9d790ce2f48a26a7&keytype2=tf_ipsecsha  +
RelatedToResource:3DVC  +, Resource:INSDC  +, and Resource:re3data.org  +
SuperCategoryResource  +
Supporting AgencyNLM  +
SynonymNCBI BioProject Database  +