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Resource:NCBI BioProject

Name: Resource:NCBI BioProject
Description: Database to facilitate organization and classification of project data submitted to NCBI, EBI and DDBJ databases, it captures descriptive information about research projects that result in high volume submissions to archival databases, ties together related data across multiple archives and serves as a central portal by which to inform users of data availability. BioProject records link to corresponding data stored in archival repositories.

A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project. It is a searchable collection of complete and incomplete (in-progress) large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms.

Submissions are supported by a web-based Submission Portal that guides users through a series of forms for input of rich metadata describing their projects.

The BioProject resource is a redesigned, expanded, replacement of the NCBI Genome Project resource. The redesign adds tracking of several data elements including more precise information about a project’s scope, material, and objectives. Genome Project identifiers are retained in the BioProject as the ID value for a record, and an Accession number has been added. Other changes include a more flexible approach to grouping projects and addition of data elements including fields for funding source and general relevance categories The web site presentation has been redesigned and some of the data elements that can be tracked in the new database design will be added to the public display once data has accumulated. In addition, database content is exchanged with other members of the International Nucleotide Sequence Database Collaboration (INSDC).

BioProject is accessible via FTP.[1]
Other Name(s): NCBI BioProject Database
Parent Organization: Resource:National Center for Biotechnology Information
Supporting Agency: National Library of Medicine
Resource Type(s): Database
Keywords: Genome sequencing, Sequencing, Genotype, Phenotype, Sequence variant, Epigenetic, Gold standard or authority
Abbreviation: BioProject
Resource: Resource
URL: http://www.ncbi.nlm.nih.gov/bioproject
PMID: PMID 22139929
Publication link: http://nar.oxfordjournals.org/content/40/D1/D57.abstract?ijkey=0469da2e2cd8abe21201c5de9d790ce2f48a26a7&keytype2=tf_ipsecsha
Availability: The community can contribute to this resource.
Id: nlx_143909
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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References

  1. Barrett T et al. (2012) BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Res 40: D57-63 PubMed

Notes

This page uses this default form:Resource

Contributors

Aarnaud, Ccdbuser, Wawong



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Facts about Resource:NCBI BioProjectRDF feed
AbbrevBioProject  +
AvailabilityThe community can contribute to this resource.  +
CurationStatuscurated  +
DefiningCitationhttp://www.ncbi.nlm.nih.gov/bioproject  +
DefinitionDatabase to facilitate organization and cl Database to facilitate organization and classification of project data submitted to NCBI, EBI and DDBJ databases, it captures descriptive information about research projects that result in high volume submissions to archival databases, ties together related data across multiple archives and serves as a central portal by which to inform users of data availability. BioProject records link to corresponding data stored in archival repositories.

A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project. It is a searchable collection of complete and incomplete (in-progress) large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms.

Submissions are supported by a web-based Submission Portal that guides users through a series of forms for input of rich metadata describing their projects.

The BioProject resource is a redesigned, expanded, replacement of the NCBI Genome Project resource. The redesign adds tracking of several data elements including more precise information about a project’s scope, material, and objectives. Genome Project identifiers are retained in the BioProject as the ID value for a record, and an Accession number has been added. Other changes include a more flexible approach to grouping projects and addition of data elements including fields for funding source and general relevance categories The web site presentation has been redesigned and some of the data elements that can be tracked in the new database design will be added to the public display once data has accumulated. In addition, database content is exchanged with other members of the International Nucleotide Sequence Database Collaboration (INSDC).

BioProject is accessible via FTP. INSDC).

BioProject is accessible via FTP.
ExampleImageBioProject.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnlx_143909  +
Is part ofResource:National Center for Biotechnology Information  +
KeywordsGenome sequencing  +, Sequencing  +, Genotype  +, Phenotype  +, Sequence variant  +, Epigenetic  +, and Gold standard or authority  +
LabelResource:NCBI BioProject  +
ModifiedDate22 April 2013  +
PMID22139929  +
Page has default formThis property is a special property in this wiki.Resource  +
PublicationLinkhttp://nar.oxfordjournals.org/content/40/D1/D57.abstract?ijkey=0469da2e2cd8abe21201c5de9d790ce2f48a26a7&keytype2=tf_ipsecsha  +
SuperCategoryResource  +
Supporting AgencyNational Library of Medicine  +
SynonymNCBI BioProject Database  +