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Resource:Integrated Nervous System Connectivity

Name: Resource:Integrated Nervous System Connectivity
Description: Virtual database currently indexing multiple connectivity databases including:

These data come primarily from published work or expert opinion. It is likely that some differences in connectivity among brain regions may be due to differing opinion of brain region boundaries in addition to species differences.

All data was fit from the source data to statements that have two connected regions, i.e., connection from and connection to with the region abbreviation first followed by the region full name. Thus, an afferent from hippocampus to cortex (in the source data) would be aligned to "connection from" cortex, "connection to" hippocampus. The connection strength was aligned from symbols and numbers into the following categories: heavy, moderate, weak, not detected, exists, and unknown. Publications are reported and links to PubMed have been added, where possible. All other information that was available and relevant from each source was concatenated into the notes column.

The specifics of the alignment below:

  • For CoCoMac the projection strength was translated as follows:
    • when l2_nif_0000_00022_cocomac_connectivity.density = '0' then 'Not detected'
    • when l2_nif_0000_00022_cocomac_connectivity.density = '1' then 'Weak'
    • when l2_nif_0000_00022_cocomac_connectivity.density = '2' then 'Moderate'
    • when l2_nif_0000_00022_cocomac_connectivity.density = '3' then 'Heavy'
    • when l2_nif_0000_00022_cocomac_connectivity.density = 'X' then 'Exists'
  • For BAMS database:
    • lower (case when a.PROJECTION_STRENGTH like 'strong' then 'Heavy'
    • when a.PROJECTION_STRENGTH like 'very strong' then 'Heavy'
    • when a.PROJECTION_STRENGTH like 'light/moderate' then 'Moderate'
    • when a.PROJECTION_STRENGTH like 'moderate' then 'Moderate'
    • when a.PROJECTION_STRENGTH like 'light' then 'Weak'
    • when a.PROJECTION_STRENGTH like 'very light' then 'Weak'
    • when a.PROJECTION_STRENGTH like 'moderate/strong' then 'Heavy'
    • when a.PROJECTION_STRENGTH like 'not present' then 'Not detected'
  • For BrainMaps:
    • when l2_nif_0000_00093_brainmaps_connectivity.strength like '++++' then 'Heavy'
    • when l2_nif_0000_00093_brainmaps_connectivity.strength like '+++' then 'Moderate'
    • else 'Unknown'
Other Name(s): Nervous System Connectivity, Neuroscience Information Framework Integrated Nervous System Connectivity, Integrated Nervous System Connectivity View, NIF Integrated NSC, NIF Integrated Nervous System Connectivity View, NIF NSC, Integrated Nervous System Connectivity View, Integrated NSC View
Abbreviation: Integrated NSC, NSC,
Parent Organization: Resource:Integrated
Resource Type(s): Database
Resource: Resource
URL: https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-8
*Id: nif-0000-07732
Related to: Resource:The Brain Architecture Management System, Resource:CoCoMac (Collations of Connectivity Data on the Macaque Brain), Resource:BrainMaps.org: High Resolution Brain Atlases, Resource:Connectome Wiki, Resource:Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat, Resource:Avian Brain Circuitry Database, Resource:NIF Data Federation
Availability: Data are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the, Creative Commons Attribution License
Keywords: Connectivity, Nervous system, Macaque, Brain, Bird
Organism: Rhesus monkey, Aves, Human, Japanese macaque, Macaque, Mouse, Rat, Zebra finch
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

This resource will be curated within 7 days.

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Notes

This page uses this default form:Resource

Old URL: http://neuinfo.org/nif/nifgwt.html?query=nif-0000-07732
Old URL: https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nif-0000-07732-1

Contributors

Aarnaud, Yazin, Zaidaziz



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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:Integrated Nervous System ConnectivityRDF feed
AbbrevIntegrated NSC, NSC,  +
AvailabilityData are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the  +, and Creative Commons Attribution License  +
CurationStatuscurated  +
DefiningCitationhttps://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-8  +
DefinitionVirtual database currently indexing multip Virtual database currently indexing multiple connectivity databases including:

These data come primarily from published work or expert opinion. It is likely that some differences in connectivity among brain regions may be due to differing opinion of brain region boundaries in addition to species differences.

All data was fit from the source data to statements that have two connected regions, i.e., connection from and connection to with the region abbreviation first followed by the region full name. Thus, an afferent from hippocampus to cortex (in the source data) would be aligned to "connection from" cortex, "connection to" hippocampus. The connection strength was aligned from symbols and numbers into the following categories: heavy, moderate, weak, not detected, exists, and unknown. Publications are reported and links to PubMed have been added, where possible. All other information that was available and relevant from each source was concatenated into the notes column.

The specifics of the alignment below:

  • For CoCoMac the projection strength was translated as follows:
    • when l2_nif_0000_00022_cocomac_connectivity.density = '0' then 'Not detected'
    • when l2_nif_0000_00022_cocomac_connectivity.density = '1' then 'Weak'
    • when l2_nif_0000_00022_cocomac_connectivity.density = '2' then 'Moderate'
    • when l2_nif_0000_00022_cocomac_connectivity.density = '3' then 'Heavy'
    • when l2_nif_0000_00022_cocomac_connectivity.density = 'X' then 'Exists'
  • For BAMS database:
    • lower (case when a.PROJECTION_STRENGTH like 'strong' then 'Heavy'
    • when a.PROJECTION_STRENGTH like 'very strong' then 'Heavy'
    • when a.PROJECTION_STRENGTH like 'light/moderate' then 'Moderate'
    • when a.PROJECTION_STRENGTH like 'moderate' then 'Moderate'
    • when a.PROJECTION_STRENGTH like 'light' then 'Weak'
    • when a.PROJECTION_STRENGTH like 'very light' then 'Weak'
    • when a.PROJECTION_STRENGTH like 'moderate/strong' then 'Heavy'
    • when a.PROJECTION_STRENGTH like 'not present' then 'Not detected'
  • For BrainMaps:
    • when l2_nif_0000_00093_brainmaps_connectivity.strength like '++++' then 'Heavy'
    • when l2_nif_0000_00093_brainmaps_connectivity.strength like '+++' then 'Moderate'
    • else 'Unknown' ke '+++' then 'Moderate'
    • else 'Unknown'
ExampleImageIntegrated NSC.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnif-0000-07732  +
Is part ofResource:Integrated  +
KeywordsConnectivity  +, Nervous system  +, Macaque  +, Brain  +, and Bird  +
LabelResource:Integrated Nervous System Connectivity  +
ModifiedDate11 April 2014  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:The Brain Architecture Management System  +, Resource:CoCoMac (Collations of Connectivity Data on the Macaque Brain)  +, Resource:BrainMaps.org: High Resolution Brain Atlases  +, Resource:Connectome Wiki  +, Resource:Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat  +, Resource:Avian Brain Circuitry Database  +, and Resource:NIF Data Federation  +
SpeciesRhesus monkey  +, Aves  +, Human  +, Japanese macaque  +, Macaque  +, Mouse  +, Rat  +, and Zebra finch  +
SuperCategoryResource  +
SynonymNervous System Connectivity  +, Neuroscience Information Framework Integrated Nervous System Connectivity  +, Integrated Nervous System Connectivity View  +, NIF Integrated NSC  +, NIF Integrated Nervous System Connectivity View  +, NIF NSC  +, and Integrated NSC View  +