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Resource:OBO

Name: Resource:OBO
Description: A collaboration involving developers of science-based ontologies who are establishing a set of principles for ontology development with the goal of creating a suite of orthogonal interoperable reference ontologies in the biomedical domain. In addition to a listing of OBO ontologies, this site provides a statement of the OBO Foundry principles, discussion fora, technical infrastructure, and other services to facilitate ontology development. Feedback is welcome and participation encouraged.
Other Name(s): OBO Foundry, Open Biological and Biomedical Ontologies, Open Biological and Biomedical Ontology Foundry
Abbreviation: OBO
Parent Organization: Resource:Berkeley Bioinformatics Open-Source Projects
Resource Type(s): Standard specification, Ontology, Knowledge environment resource
Resource: Resource
URL: http://www.obofoundry.org/
*Id: nlx_22892
PMID: PMID 17989687
Publication link: http://www.nature.com/nbt/journal/v25/n11/full/nbt1346.html
Listed By: Resource:FORCE11
Keywords: biomedical, metadata standard, Gold standard
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:OBO

Resource:BioPerl, Resource:COBrA, Resource:Cell Type Ontology, Resource:Drosophila anatomy and development ontologies, Resource:EnvO, Resource:Genomic Standards Consortium, Resource:LexGrid, Resource:MeGO, Resource:OBO Tracker: Plant Ontology (PO) TERM requests, Resource:OBO-Edit, Resource:ONTO-PERL, Resource:OWLTools, Resource:OnEx - Ontology Evolution Explorer, Resource:OntoVisT, Resource:Ontology Lookup Service, Resource:RIKEN integrated database of mammals, Resource:SBO, Resource:Standards-based Infrastructure with Distributed Resources, Resource:Wandora, Resource:Zebrafish Anatomical Ontology, Resource:dkCOIN, Resource:eVOC, Resource:go-perl

Parts of Resource:OBO

Curation status: Curated

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Notes

This page uses this default form:Resource

Download All OBO Ontologies

CSV

OBO Ontologies Table View

Abbrev Is part of DefiningCitation
Resource:Adverse Event Reporting Ontology AERO http://code.google.com/p/adverse-event-reporting-ontology/
Resource:Ascomycete Phenotype Ontology APO Resource:SGD http://purl.bioontology.org/ontology/APO
Resource:Beta Cell Genomics Ontology OBI_BCGO Resource:Beta Cell Biology Consortium http://code.google.com/p/bcgo-ontology/
Resource:Biological Collections Ontology BCO Resource:Biocode Commons http://code.google.com/p/bco/
Resource:CHEBI CHEBI Resource:European Bioinformatics Institute http://www.ebi.ac.uk/chebi/
Resource:Cell Line Ontology CLO University of Michigan Medical School; Michigan; USA http://www.clo-ontology.org/
Resource:Chemical Information Ontology CHEMINF Resource:European Bioinformatics Institute http://code.google.com/p/semanticchemistry/
Resource:Chemical Methods Ontology CHMO Resource:Royal Society of Chemistry https://code.google.com/p/rsc-cmo/
Resource:Clinical Measurement Ontology CMO Medical College of Wisconsin; Wisconsin; USA http://purl.bioontology.org/ontology/CMO
Resource:Common Anatomy Reference Ontology CARO http://www.bioontology.org/wiki/index.php/CARO:Main_Page
Resource:Comparative Data Analysis Ontology CDAO http://sourceforge.net/apps/mediawiki/cdao/
Resource:Dictyostelium Discoideum Anatomy Ontology DDANAT Resource:DictyBase http://purl.bioontology.org/ontology/DDANAT
Resource:Emotion Ontology MFOEM https://code.google.com/p/emotion-ontology/
Resource:Experimental Conditions Ontology XCO Medical College of Wisconsin; Wisconsin; USA http://purl.bioontology.org/ontology/XCO
Resource:Fission Yeast Phenotype Ontology FYPO Resource:PomBase http://purl.bioontology.org/ontology/FYPO
Resource:Fly Taxonomy FB-SP, FBsp Resource:FLYBASE http://purl.bioontology.org/ontology/FB-SP
Resource:FlyBase Controlled Vocabulary FB-CV, FBcv Resource:FLYBASE http://purl.bioontology.org/ontology/FB-CV
Resource:GO GO, GO REF Gene Ontology Consortium http://www.geneontology.org/
Resource:Gazetteer GAZ Resource:Genomic Standards Consortium http://purl.bioontology.org/ontology/GAZ
Resource:Gene Regulation Ontology GRO, BOOTStrep Resource:European Bioinformatics Institute http://purl.bioontology.org/ontology/GRO
Resource:HPO - Human Phenotype Ontology HPO, HP Charite - Universitatsmedizin Berlin; Berlin; Germany http://www.human-phenotype-ontology.org/
Resource:Human Disease Ontology DOID Resource:Disease Ontology http://purl.bioontology.org/ontology/DOID
Resource:Hymenoptera Anatomy Ontology HAO http://hymao.org
Resource:Influenza Ontology FLU University of Maryland; Maryland; USA http://purl.obolibrary.org/obo/flu/
Resource:Information Artifact Ontology IAO http://purl.obolibrary.org/obo/iao
Resource:Kinetic Simulation Algorithm Ontology KISAO Resource:BioModels Database http://biomodels.net/kisao/
Resource:Lipid Ontology LiPrO http://purl.bioontology.org/ontology/LIPRO
Resource:Malaria Ontology IDOMAL Resource:AnoBase: An Anopheles database http://purl.bioontology.org/ontology/IDOMAL
Resource:Measurement Method Ontology MMO http://purl.bioontology.org/ontology/MMO
Resource:Mental Functioning Ontology MF, MFO University at Buffalo; New York; USA http://code.google.com/p/mental-functioning-ontology/
Resource:Minimal Anatomical Terminology MAT Resource:Edinburgh Mouse Atlas Project http://purl.bioontology.org/ontology/MAT
Resource:NCI Thesaurus NCIt National Cancer Institute http://ncit.nci.nih.gov/
Resource:Neurobehavior Ontology NBO http://code.google.com/p/behavior-ontology
Resource:Ontology for Biomedical Investigations OBI http://obi-ontology.org/
Resource:Ontology for General Medical Science OGMS http://code.google.com/p/ogms/
Resource:Ontology for Genetic Interval OGI https://code.google.com/p/ontology-for-genetic-interval/
Resource:Ontology for Parasite LifeCycle OPL http://code.google.com/p/opl-ontology/
Resource:Ontology of Adverse Events OAE University of Michigan Medical School; Michigan; USA http://www.oae-ontology.org
Resource:Ontology of Medically Related Social Entities OMRSE http://code.google.com/p/omrse/
Resource:Ontology of Vaccine Adverse Events OVAE University of Michigan Medical School; Michigan; USA http://www.violinet.org/ovae/
Resource:Pathway Ontology PW Resource:RGD http://rgd.mcw.edu/tools/ontology/ont_search.cgi
Resource:Physico-Chemical Methods and Properties FIX Resource:CHEBI http://purl.bioontology.org/ontology/FIX
Resource:Physico-Chemical Process REX Resource:CHEBI http://purl.bioontology.org/ontology/MO
Resource:Plant Environmental Conditions PECO, EO Resource:Gramene http://archive.gramene.org/plant_ontology/ontology_browse.html#eo
Resource:Plant Trait Ontology PTO, TO Resource:Gramene http://archive.gramene.org/plant_ontology/ontology_browse.html#to
Resource:Population and Community Ontology PCO http://code.google.com/p/popcomm-ontology/
Resource:Porifera Ontology PORO http://purl.obolibrary.org/obo/poro
Resource:RNA Ontology RNAO http://code.google.com/p/rnao/
Resource:Rat Strain Ontology RS Resource:RGD http://rgd.mcw.edu/tools/ontology/ont_search.cgi
Resource:Software Ontology SWO Resource:European Bioinformatics Institute
University of Manchester; Manchester; United Kingdom
http://theswo.sourceforge.net
Resource:Spider Ontology SPD Resource:Tree of Life: Phylogeny of Spiders http://purl.bioontology.org/ontology/SPD
Resource:Subcellular Anatomy Ontology SAO, NIF Subcellular Resource:Cell Centered Database http://ccdb.ucsd.edu/SAO
Resource:Suggested Ontology for Pharmacogenomics SOPHARM, SO-Pharm University of Lorraine; Lorraine; France http://www.loria.fr/~coulet/sopharm2.0_description.php
Resource:Teleost Anatomy Ontology TAO Resource:Phenoscape http://phenoscape.org/wiki/Teleost_Anatomy_Ontology
Resource:Vertebrate Taxonomy Ontology VTO Resource:Phenoscape http://purl.bioontology.org/ontology/VTO
Resource:Xenopus Anatomy Ontology XAO Resource:Xenbase http://www.xenbase.org/anatomy/xao.do?method=display

Contributors

Aarnaud



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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:OBORDF feed
AbbrevOBO  +
CurationStatuscurated  +
DefiningCitationhttp://www.obofoundry.org/  +
DefinitionA collaboration involving developers of sc A collaboration involving developers of science-based ontologies who are establishing a set of principles for ontology development with the goal of creating a suite of orthogonal interoperable reference ontologies in the biomedical domain. In addition to a listing of OBO ontologies, this site provides a statement of the OBO Foundry principles, discussion fora, technical infrastructure, and other services to facilitate ontology development. Feedback is welcome and participation encouraged. k is welcome and participation encouraged.
ExampleImageOBO.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleStandard specification  +, Ontology  +, and Knowledge environment resource  +
Idnlx_22892  +
Is part ofResource:Berkeley Bioinformatics Open-Source Projects  +
KeywordsBiomedical  +, Metadata standard  +, and Gold standard  +
LabelResource:OBO  +
ListedbyResource:FORCE11  +
ModifiedDate3 September 2014  +
PMID17989687  +
Page has default formThis property is a special property in this wiki.Resource  +
PublicationLinkhttp://www.nature.com/nbt/journal/v25/n11/full/nbt1346.html  +
SuperCategoryResource  +
SynonymOBO Foundry  +, Open Biological and Biomedical Ontologies  +, and Open Biological and Biomedical Ontology Foundry  +