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Resource:Olfactory Receptor DataBase

Name: Resource:Olfactory Receptor DataBase
Description: ORDB is a database of vertebrate olfactory receptors genes and proteins. It supports sequencing and analysis of these receptors by providing a comprehensive archive with search tools for this expanding family. The database also incorporates a broad range of chemosensory genes and proteins, including the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfaction receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), and fungal pheromone receptors (FPRs).

ORDB currently houses chemosensory receptors for more than 50 organisms.
ORDB contains public and private sections which provide tools for investigators to analyze the functions of these very large gene families of G protein-coupled receptors. It also provides links to a local cluster of databases of related information in SenseLab, and to other relevant databases worldwide.

The database aims to house all of the known olfactory receptor and chemoreceptor sequences in both nucleotide and amino acid form and serves four main purposes:

  • It is a repository of olfactory receptor sequences.
  • It provides tools for sequence analysis.
  • It supports similarity searches (screens) which reduces duplicate work.
  • It provides links to other types of receptor information, e.g. 3D models.

The database is accessible to two classes of users:

  • General public www users have full access to all the public sequences, models and resources in the database.
  • Source laboratories are the laboratories that clone olfactory receptors and submit sequences in the private or public database. They can search any sequence they deposited to the database against any private or public sequence in the database. This user level is suited for laboratories that are actively cloning olfactory receptors.
Other Name(s): Olfactory Receptors Database
Parent Organization: Yale School of Medicine; Connecticut; USA
Supporting Agency: Resource:The Human Brain Project., NIDCD, NIMH, NIA, NICD, NINDS, Multidisciplinary University Research Initiative, NIH, National Library of Medicine, National Aeronautics and Space Administration
Related to: NIF Data Federation
Resource Type(s): Database, Data analysis service, Data storage repository
Keywords: fungal pheromone receptor, gene, Caenorhabditis elegans, Chemosensory, chemosensory receptor, G protein-coupled receptor, insect olfaction receptor, Protein, receptor, taste papilla receptor, vertebrate, vomeronasal organ receptor, Olfactory receptor, Human, Mouse, Nucleotide, Amino acid, Chemoreceptor sequence, Olfactory receptor sequence
Grant: RO1 DC 009977, P01 DC 04732, G08 LM05583
Abbreviation: ORDB
Resource: Resource
URL: http://senselab.med.yale.edu/ordb/
PMID: PMID 11752336, 9847223, 9218144
Publication link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99065/?tool=pubmed
Id: nif-0000-03213
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Facts about Resource:Olfactory Receptor DataBaseRDF feed
AbbrevORDB  +
CurationStatuscurated  +
DefiningCitationhttp://senselab.med.yale.edu/ordb/  +
DefinitionORDB is a database of vertebrate olfactory ORDB is a database of vertebrate olfactory receptors genes and proteins. It supports sequencing and analysis of these receptors by providing a comprehensive archive with search tools for this expanding family. The database also incorporates a broad range of chemosensory genes and proteins, including the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfaction receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), and fungal pheromone receptors (FPRs).

ORDB currently houses chemosensory receptors for more than 50 organisms.
ORDB contains public and private sections which provide tools for investigators to analyze the functions of these very large gene families of G protein-coupled receptors. It also provides links to a local cluster of databases of related information in SenseLab, and to other relevant databases worldwide.

The database aims to house all of the known olfactory receptor and chemoreceptor sequences in both nucleotide and amino acid form and serves four main purposes:

  • It is a repository of olfactory receptor sequences.
  • It provides tools for sequence analysis.
  • It supports similarity searches (screens) which reduces duplicate work.
  • It provides links to other types of receptor information, e.g. 3D models.

The database is accessible to two classes of users:

  • General public www users have full access to all the public sequences, models and resources in the database.
  • Source laboratories are the laboratories that clone olfactory receptors and submit sequences in the private or public database. They can search any sequence they deposited to the database against any private or public sequence in the database. This user level is suited for laboratories that are actively cloning olfactory receptors. are actively cloning olfactory receptors.
ExampleImageORDB.gif  +
GrantCategory:RO1 DC 009977   +, Category:P01 DC 04732   +, and Category:G08 LM05583   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +, Data analysis service  +, and Data storage repository  +
Idnif-0000-03213  +
Is part ofYale School of Medicine; Connecticut; USA  +
KeywordsFungal pheromone receptor  +, Gene  +, Caenorhabditis elegans  +, Chemosensory  +, Chemosensory receptor  +, G protein-coupled receptor  +, Insect olfaction receptor  +, Protein  +, Receptor  +, Taste papilla receptor  +, Vertebrate  +, Vomeronasal organ receptor  +, Olfactory receptor  +, Human  +, Mouse  +, Nucleotide  +, Amino acid  +, Chemoreceptor sequence  +, and Olfactory receptor sequence  +
LabelResource:Olfactory Receptor DataBase  +
ModifiedDate20 April 2012  +
PMID11752336, 9847223, 9218144  +
Page has default formThis property is a special property in this wiki.Resource  +
PublicationLinkhttp://www.ncbi.nlm.nih.gov/pmc/articles/PMC99065/?tool=pubmed  +
RelatedToNIF Data Federation  +
Supporting AgencyResource:The Human Brain Project.  +, NIDCD  +, NIMH  +, NIA  +, NICD  +, NINDS  +, Multidisciplinary University Research Initiative  +, NIH  +, National Library of Medicine  +, and National Aeronautics and Space Administration  +
SynonymOlfactory Receptors Database  +