From NeuroLex
Resource:PATRIC
| Name: | Resource:PATRIC |
| Description: | The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded to create a data and analysis resource for selected NIAID priority pathogens, specifically proteobacteria of the genera Brucella, Rickettsia and Coxiella, and corona-, calici- and lyssaviruses and viruses associated with hepatitis A and E.
The goal of the project is to provide a comprehensive bioinformatics resource for these pathogens, including consistently annotated genome, proteome and metabolic pathway data to facilitate research into counter-measures, including drugs, vaccines and diagnostics. The PATRIC infrastructure consists of a relational database, analytical pipelines and a website which supports browsing, querying, data visualization and the ability to download raw and curated data in standard formats. At present, the site warehouses complete sequences for 17 bacterial and 332 viral genomes. The PATRIC project includes three primary collaborators: the University of Chicago, the University of Manchester, and New City Media. The University of Chicago is providing genome annotations and a PATRIC end-user genome annotation service using their Rapid Annotation using Subsystem Technology (RAST) system. The National Centre for Text Mining (NaCTeM) at the University of Manchester is providing literature-based text mining capability and service. New City Media is providing assistance in website interface development. An FTP server and download tool are available.[1] |
| Other Name(s): | PathoSystems Resource Integration Center |
| Parent Organization: | Virginia Polytechnic Institute and State University; Virginia; USA |
| Supporting Agency: | National Institute of Allergy and Infectious Diseases |
| Resource Type(s): | Web accessible database, Downloadable database, Data analysis service |
| Grant: | Contract HHSN272200900040C |
| Abbreviation: | PATRIC |
| Resource: | Resource |
| URL: | http://www.patricbrc.org/portal/portal/patric/Home |
| PMID: | PMID 17142235 |
| Id: | nlx_17476 |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Curation status: Curated
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References
- ↑ Snyder EE et al. (2007) PATRIC: the VBI PathoSystems Resource Integration Center. Nucleic Acids Res 35: D401-6 PubMed
Notes
This page uses this default form:Resource
Old url: http://patric.vbi.vt.edu/
| Abbrev | PATRIC + |
| CurationStatus | curated + |
| DefiningCitation | http://www.patricbrc.org/portal/portal/patric/Home + |
| Definition | The PathoSystems Resource Integration Cent … The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded to create a data and analysis resource for selected NIAID priority pathogens, specifically proteobacteria of the genera Brucella, Rickettsia and Coxiella, and corona-, calici- and lyssaviruses and viruses associated with hepatitis A and E.
The goal of the project is to provide a comprehensive bioinformatics resource for these pathogens, including consistently annotated genome, proteome and metabolic pathway data to facilitate research into counter-measures, including drugs, vaccines and diagnostics. The PATRIC infrastructure consists of a relational database, analytical pipelines and a website which supports browsing, querying, data visualization and the ability to download raw and curated data in standard formats. At present, the site warehouses complete sequences for 17 bacterial and 332 viral genomes. The PATRIC project includes three primary collaborators: the University of Chicago, the University of Manchester, and New City Media. The University of Chicago is providing genome annotations and a PATRIC end-user genome annotation service using their Rapid Annotation using Subsystem Technology (RAST) system. The National Centre for Text Mining (NaCTeM) at the University of Manchester is providing literature-based text mining capability and service. New City Media is providing assistance in website interface development. An FTP server and download tool are available. TP server and download tool are available. |
| ExampleImage | |
| Grant | Category:Contract HHSN272200900040C + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Web accessible database +, Downloadable database +, and Data analysis service + |
| Id | nlx_17476 + |
| Is part of | Virginia Polytechnic Institute and State University; Virginia; USA + |
| Label | Resource:PATRIC + |
| ModifiedDate | 13 July 2011 + |
| PMID | 17142235 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| SuperCategory | Resource + |
| Supporting Agency | National Institute of Allergy and Infectious Diseases + |
| Synonym | PathoSystems Resource Integration Center + |




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