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Resource:PIR

Name: Resource:PIR
Description: The Protein Information Resource (PIR) is an integrated public bioinformatics resource to support genomic, proteomic and systems biology research and scientific studies. For over four decades the PIR has provided databases and protein sequence analysis tools to the scientific community, including the Protein Sequence Database (PSD), which grew out from the Atlas of Protein Sequence and Structure.

Located both at the University of Delaware and Georgetown University, PIR conducts research in biomedical text mining and ontology, computational systems biology, and bioinformatics cyberinfrastructure. The PIR web sites are freely accessible by researchers worldwide with over 4 million hits per month from over 100,000 unique sites.

In 2002 PIR, along with its international partners, EBI (European Bioinformatics Institute) and SIB (Swiss Institute of Bioinformatics), were awarded a grant from NIH to create UniProt, a single worldwide database of protein sequence and function, by unifying the PIR-PSD, Swiss-Prot, and TrEMBL databases.

Currently, PIR major activities include: i) UniProt (Universal Protein Resource) development, ii) iProClass protein data integration and ID mapping, iii) PRO protein ontology, and iv) iProLINK protein literature mining and ontology development.

The FTP site provides free download for iProClass, PIRSF, and PRO
Other Name(s): Protein Information Resource, PIR - Protein Information Resource
Abbreviation: PIR
Parent Organization: University of Delaware; Delaware; USA, Georgetown University; Washington D.C.; USA
Supporting Agency: National Library of Medicine
Grant: P41 LM05798
Resource Type(s): Topical portal, Web accessible database, Downloadable database, Data analysis service
Resource: Resource
URL: http://proteininformationresource.org/
*Id: nif-0000-00143
PMID: PMID 12520019
Publication link: http://pir.georgetown.edu/pirwww/about/brochure.pdf
Keywords: annotation, genomic, mining, protein, protein bioinformatics, proteomic, research, sequence, structure, systems biology, Gold standard or authority
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:PIR

Resource:NCBI Protein

Parts of Resource:PIR

Curation status: Uncurated

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Notes

This page uses this default form:Resource

Alt urls: http://pir.georgetown.edu, http://pir.georgetown.edu/pirwww/index.shtml

Contributors

Aarnaud, Ccdbuser, Zaidaziz



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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:PIRRDF feed
AbbrevPIR  +
CurationStatuscurated  +
DefiningCitationhttp://proteininformationresource.org/  +
DefinitionThe Protein Information Resource (PIR) is The Protein Information Resource (PIR) is an integrated public bioinformatics resource to support genomic, proteomic and systems biology research and scientific studies. For over four decades the PIR has provided databases and protein sequence analysis tools to the scientific community, including the Protein Sequence Database (PSD), which grew out from the Atlas of Protein Sequence and Structure.

Located both at the University of Delaware and Georgetown University, PIR conducts research in biomedical text mining and ontology, computational systems biology, and bioinformatics cyberinfrastructure. The PIR web sites are freely accessible by researchers worldwide with over 4 million hits per month from over 100,000 unique sites.

In 2002 PIR, along with its international partners, EBI (European Bioinformatics Institute) and SIB (Swiss Institute of Bioinformatics), were awarded a grant from NIH to create UniProt, a single worldwide database of protein sequence and function, by unifying the PIR-PSD, Swiss-Prot, and TrEMBL databases.

Currently, PIR major activities include: i) UniProt (Universal Protein Resource) development, ii) iProClass protein data integration and ID mapping, iii) PRO protein ontology, and iv) iProLINK protein literature mining and ontology development.

The FTP site provides free download for iProClass, PIRSF, and PRO
ree download for iProClass, PIRSF, and PRO
ExampleImagePIR.PNG  +
GrantCategory:P41 LM05798   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleTopical portal  +, Web accessible database  +, Downloadable database  +, and Data analysis service  +
Idnif-0000-00143  +
Is part ofUniversity of Delaware; Delaware; USA  +, and Georgetown University; Washington D.C.; USA  +
KeywordsAnnotation  +, Genomic  +, Mining  +, Protein  +, Protein bioinformatics  +, Proteomic  +, Research  +, Sequence  +, Structure  +, Systems biology  +, and Gold standard or authority  +
LabelResource:PIR  +
ModifiedDate1 August 2011  +
PMID12520019  +
Page has default formThis property is a special property in this wiki.Resource  +
PublicationLinkhttp://pir.georgetown.edu/pirwww/about/brochure.pdf  +
SuperCategoryResource  +
Supporting AgencyNational Library of Medicine  +
SynonymProtein Information Resource  +, and PIR - Protein Information Resource  +