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Resource:Patterns of Gene Expression in Drosophila Embryogenesis

Name: Resource:Patterns of Gene Expression in Drosophila Embryogenesis
Description: Database of embryonic expression patterns using a high throughput RNA in situ hybridization of the protein-coding genes identified in the Drosophila melanogaster genome with images and controlled vocabulary annotations.

At the end of production pipeline gene expression patterns are documented by taking a large number of digital images of individual embryos. The quality and identity of the captured image data are verified by independently derived microarray time-course analysis of gene expression using Affymetrix GeneChip technology.

Gene expression patterns are annotated with controlled vocabulary for developmental anatomy of Drosophila embryogenesis. Image, microarray and annotation data are stored in a modified version of Gene Ontology database and the entire dataset is available on the web in browsable and searchable form or MySQL dump can be downloaded. So far, they have examined expression of 7507 genes and documented them with 111184 digital photographs.[1]
Other Name(s): BDGP Embryonic Expression Patterns
Abbreviation: BDGP insitu
Parent Organization: Resource:Berkeley Drosophila Genome Project
Supporting Agency: Howard Hughes Medical Institute, NIH
Grant: P50 GH00750, R01 GM076655, HG00750, P41 HG00739
Resource Type(s): Image collection, Database, Source code
Resource: Resource
URL: http://insitu.fruitfly.org/cgi-bin/ex/insitu.pl
*Id: nif-0000-25550
PMID: PMID 17645804, 12537577
Related to: Resource:GO
Keywords: embryo, embryogenesis, gene, anatomy, microarray, pattern, protocol, RNA, Gene expression, Expression pattern, Embryonic drosophila, in situ hybridization, annotation, EST
Organism: Drosophila
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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References

  1. Tomancak P et al. (2007) Global analysis of patterns of gene expression during Drosophila embryogenesis. Genome Biol 8: R145 PubMed

Notes

This page uses this default form:Resource

Old URL: http://www.fruitfly.org/cgi-bin/ex/insitu.pl

Contributors

Aarnaud, Ccdbuser, Nifbot2, Zaidaziz



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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:Patterns of Gene Expression in Drosophila EmbryogenesisRDF feed
AbbrevBDGP insitu  +
CurationStatuscurated  +
DefiningCitationhttp://insitu.fruitfly.org/cgi-bin/ex/insitu.pl  +
DefinitionDatabase of embryonic expression patterns Database of embryonic expression patterns using a high throughput RNA in situ hybridization of the protein-coding genes identified in the Drosophila melanogaster genome with images and controlled vocabulary annotations.

At the end of production pipeline gene expression patterns are documented by taking a large number of digital images of individual embryos. The quality and identity of the captured image data are verified by independently derived microarray time-course analysis of gene expression using Affymetrix GeneChip technology.

Gene expression patterns are annotated with controlled vocabulary for developmental anatomy of Drosophila embryogenesis. Image, microarray and annotation data are stored in a modified version of Gene Ontology database and the entire dataset is available on the web in browsable and searchable form or MySQL dump can be downloaded. So far, they have examined expression of 7507 genes and documented them with 111184 digital photographs.
nted them with 111184 digital photographs.
ExampleImageBDGP insitu.PNG  +
GrantCategory:P50 GH00750   +, Category:R01 GM076655   +, Category:HG00750   +, and Category:P41 HG00739   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleImage collection  +, Database  +, and Source code  +
Idnif-0000-25550  +
Is part ofResource:Berkeley Drosophila Genome Project  +
KeywordsEmbryo  +, Embryogenesis  +, Gene  +, Anatomy  +, Microarray  +, Pattern  +, Protocol  +, RNA  +, Gene expression  +, Expression pattern  +, Embryonic drosophila  +, In situ hybridization  +, Annotation  +, and EST  +
LabelResource:Patterns of Gene Expression in Drosophila Embryogenesis  +
ModifiedDate21 March 2013  +
PMID17645804, 12537577  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:GO  +
SpeciesDrosophila  +
SuperCategoryResource  +
Supporting AgencyHoward Hughes Medical Institute  +, and NIH  +
SynonymBDGP Embryonic Expression Patterns  +