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Resource:PeptideMapper
| Name: | Resource:PeptideMapper |
| Description: | The PeptideMapper Web-Service provides alignments of peptide sequence alignments to proteins, mRNA, EST, and HTC sequences from Genbank, RefSeq, UniProt, IPI, VEGA, EMBL, and HInvDb. This mapping infrastructure is supported, in part, by the compressed peptide sequence database infrastructure (Edwards, 2007) which enables a fast, suffix-tree based mapping of peptide sequences to gene identifiers and a gene-focused detailed mapping of peptide sequences to source sequence evidence.
The PeptideMapper Web-Service can be used interactively or as a web-service using either HTTP or SOAP requests. Results of HTTP requests can be returned in a variety of formats, including XML, JSON, CSV, TSV, or XLS, and in some cases, GFF or BED; results of SOAP requests are returned as SOAP responses. |
| Other Name(s): | PeptideMapper Web-Service, Peptide Mapper |
| Parent Organization: | Resource:Edwards Lab |
| Supporting Agency: | NCI |
| Resource Type(s): | Web service |
| Keywords: | Peptide, Sequence, Protein, Alignment, expressed sequence tag, mRNA, EST, HTC, Genbank, RefSeq, UniProt, IPI, VEGA, EMBL, HInvDb |
| Grant: | CA126189 |
| Abbreviation: | PeptideMapper |
| Resource: | Resource |
| URL: | http://edwardslab.bmcb.georgetown.edu/ws/peptideMapper/ |
| PMID: | PMID 17437027 |
| Publication link: | http://www.nature.com/msb/journal/v3/n1/full/msb4100142.html |
| Id: | nlx_149229 |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Curation status: Curated
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Notes
This page uses this default form:Resource
| Abbrev | PeptideMapper + |
| CurationStatus | curated + |
| DefiningCitation | http://edwardslab.bmcb.georgetown.edu/ws/peptideMapper/ + |
| Definition | The PeptideMapper Web-Service provides ali … The PeptideMapper Web-Service provides alignments of peptide sequence alignments to proteins, mRNA, EST, and HTC sequences from Genbank, RefSeq, UniProt, IPI, VEGA, EMBL, and HInvDb. This mapping infrastructure is supported, in part, by the compressed peptide sequence database infrastructure (Edwards, 2007) which enables a fast, suffix-tree based mapping of peptide sequences to gene identifiers and a gene-focused detailed mapping of peptide sequences to source sequence evidence.
The PeptideMapper Web-Service can be used interactively or as a web-service using either HTTP or SOAP requests. Results of HTTP requests can be returned in a variety of formats, including XML, JSON, CSV, TSV, or XLS, and in some cases, GFF or BED; results of SOAP requests are returned as SOAP responses. |
| ExampleImage |  + |
| Grant | Category:CA126189 + |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Web service + |
| Id | nlx_149229 + |
| Is part of | Resource:Edwards Lab + |
| Keywords | Peptide +, Sequence +, Protein +, Alignment +, Expressed sequence tag +, MRNA +, EST +, HTC +, Genbank +, RefSeq +, UniProt +, IPI +, VEGA +, EMBL +, and HInvDb + |
| Label | Resource:PeptideMapper + |
| ModifiedDate | 12 July 2012 + |
| PMID | 17437027 + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| PublicationLink | http://www.nature.com/msb/journal/v3/n1/full/msb4100142.html + |
| SuperCategory | Resource + |
| Supporting Agency | NCI + |
| Synonym | PeptideMapper Web-Service +, and Peptide Mapper + |
