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Resource:PeptideMapper

Name: Resource:PeptideMapper
Description: The PeptideMapper Web-Service provides alignments of peptide sequence alignments to proteins, mRNA, EST, and HTC sequences from Genbank, RefSeq, UniProt, IPI, VEGA, EMBL, and HInvDb. This mapping infrastructure is supported, in part, by the compressed peptide sequence database infrastructure (Edwards, 2007) which enables a fast, suffix-tree based mapping of peptide sequences to gene identifiers and a gene-focused detailed mapping of peptide sequences to source sequence evidence.

The PeptideMapper Web-Service can be used interactively or as a web-service using either HTTP or SOAP requests. Results of HTTP requests can be returned in a variety of formats, including XML, JSON, CSV, TSV, or XLS, and in some cases, GFF or BED; results of SOAP requests are returned as SOAP responses.

The PeptideMapper Web-Service maps at most 20 peptides with length between 5 and 30 amino-acids in each request.

The number of alignments returned, per peptide, gene, and sequence type, is set to 10 by default. The default can be changed on the interactive alignments search form or by using the max web-service parameter.
Other Name(s): PeptideMapper Web-Service, Peptide Mapper
Abbreviation: PeptideMapper
Parent Organization: Resource:Edwards Lab
Supporting Agency: NCI
Grant: CA126189
Resource Type(s): Web service
Resource: Resource
URL: http://edwardslab.bmcb.georgetown.edu/ws/peptideMapper/
*Id: nlx_149229
PMID: PMID 17437027
Publication link: http://www.nature.com/msb/journal/v3/n1/full/msb4100142.html
Keywords: Peptide, Sequence, Protein, Alignment, expressed sequence tag, mRNA, EST, HTC, Genbank, RefSeq, UniProt, IPI, VEGA, EMBL, HInvDb
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Notes

This page uses this default form:Resource

Contributors

Aarnaud, Myrahaqqi



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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:PeptideMapperRDF feed
AbbrevPeptideMapper  +
CurationStatuscurated  +
DefiningCitationhttp://edwardslab.bmcb.georgetown.edu/ws/peptideMapper/  +
DefinitionThe PeptideMapper Web-Service provides ali The PeptideMapper Web-Service provides alignments of peptide sequence alignments to proteins, mRNA, EST, and HTC sequences from Genbank, RefSeq, UniProt, IPI, VEGA, EMBL, and HInvDb. This mapping infrastructure is supported, in part, by the compressed peptide sequence database infrastructure (Edwards, 2007) which enables a fast, suffix-tree based mapping of peptide sequences to gene identifiers and a gene-focused detailed mapping of peptide sequences to source sequence evidence.

The PeptideMapper Web-Service can be used interactively or as a web-service using either HTTP or SOAP requests. Results of HTTP requests can be returned in a variety of formats, including XML, JSON, CSV, TSV, or XLS, and in some cases, GFF or BED; results of SOAP requests are returned as SOAP responses.

The PeptideMapper Web-Service maps at most 20 peptides with length between 5 and 30 amino-acids in each request.

The number of alignments returned, per peptide, gene, and sequence type, is set to 10 by default. The default can be changed on the interactive alignments search form or by using the max web-service parameter.
or by using the max web-service parameter.
ExampleImagePeptideMapper.PNG  +
GrantCategory:CA126189   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleWeb service  +
Idnlx_149229  +
Is part ofResource:Edwards Lab  +
KeywordsPeptide  +, Sequence  +, Protein  +, Alignment  +, Expressed sequence tag  +, MRNA  +, EST  +, HTC  +, Genbank  +, RefSeq  +, UniProt  +, IPI  +, VEGA  +, EMBL  +, and HInvDb  +
LabelResource:PeptideMapper  +
ModifiedDate12 July 2012  +
PMID17437027  +
Page has default formThis property is a special property in this wiki.Resource  +
PublicationLinkhttp://www.nature.com/msb/journal/v3/n1/full/msb4100142.html  +
SuperCategoryResource  +
Supporting AgencyNCI  +
SynonymPeptideMapper Web-Service  +, and Peptide Mapper  +