From NeuroLex
Resource:Psychiatric Genomics Consortium
| Name: | Resource:Psychiatric Genomics Consortium |
| Description: | Portal that provides information about the organization, implementation, and results of the consortium conducting meta-analyses of genome-wide genetic data for psychiatric disease. The basic idea is that individual studies are generally too small to identify robust and replicable associations. Meta-analysis is a widely-used technique that can combine information across studies.
The PGC has focused on five critically-important disorders: autism, attention-deficit hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia. They have also done the initial “cross-disorder” analysis to look for genetic variants that predispose to multiple disorders. Additional GWAS data may become available for other disorders like anorexia nervosa (AN), Tourette syndrome (TS), and obsessive-compuls ive disorder (OCD). The initial intent of the PGC was to investigate the common single nucleotide polymorphisms (SNPs) genotyped on commercial arrays. The focus has expanded to include structural variation (copy number variation) and uncommon or rare genetic variation. To participate you are asked to upload the data from your study to the central computer used by this consortium. The Genetic Cluster Computer will serve as the data warehouse and analytical platform for this study ( http://www.geneticcluster.org). When the data from your study have been incorporated, your analyst will get an account on the central server and access to all GWAS genotypes, phenotypes, and meta-analytic results relevant to the data you deposited and the aims in which you participate. The appropriate people from your group will also become members of the relevant working groups. These steps will occur as soon as possible (under a week). It is understood that groups will share their data with the PGC at a time that is appropriate for them and their study. Published PGC results can be viewed using "ricopili", a web site that generates high-resolution images of PGC results. This web resource takes as input a gene name or genomic region, and produces a plot of PGC findings in genomic context. Results files can be obtained by any PGC member for any disease to which they contributed data. These files can also be obtained by application to the NIMH Genetics Repository.
|
| Other Name(s): | Psychiatric GWAS Consortium |
| Parent Organization: | University of North Carolina at Chapel Hill; North Carolina; USA |
| Supporting Agency: | A wide range of national international and commercial funders, National Institute of Mental Health, Netherlands Genetic Cluster Computer, Hersenstichting Nederland |
| Related to: | Resource:Ricopili, Resource:GWAS: Catalog of Published Genome-Wide Association Studies, Resource:dbGaP at NCBI, Resource:Wellcome Trust Case Control Consortium |
| Resource Type(s): | Computational hosting, Data resource, Community building portal |
| Keywords: | Structural variation, Genetic variation, single nucleotide polymorphism, Attention deficit-hyperactivity disorder, Bipolar Disorder, Schizophrenia, Mental disease, One Mind PTSD, Data sharing, visualization, genome-wide association study, genomic, genotype, phenotype, psychiatry, GWAS, copy number variation |
| Abbreviation: | PGC |
| Resource: | Resource |
| URL: | https://pgc.unc.edu/ |
| PMID: | PMID 20955924, 19895722, 19648536, 19339359, 19002139, |
| Related condition/disease: | Mental disease, Attention deficit-hyperactivity disorder, Bipolar Disorder, Schizophrenia, Major Depressive Disorder, Autism, Cross-disorder |
| Availability: | Available to members for any disease to which they contributed data or by application to individuals |
| Id: | nlx_143769 |
| Organism: | Human |
| Link to OWL / RDF: | Download this content as OWL/RDF |
Curation status: Curated
For Resource Owners:
A sitemap will keep your NIF Registry description up-to-date and inform search engines about your resource.
Please login to create the sitemap. (top right)
Learn more about what NIF can do for your resource.
Proudly proclaim your inclusion in NIF by displaying the "Registered with NIF" button on your site.
Notes
This page uses this default form:Resource
News
| Twitter Handle: @PGC_Consortium
| Abbrev | PGC + |
| Availability | Available to members for any disease to which they contributed data or by application to individuals + |
| CurationStatus | curated + |
| DefiningCitation | https://pgc.unc.edu/ + |
| Definition | Portal that provides information about the … Portal that provides information about the organization, implementation, and results of the consortium conducting meta-analyses of genome-wide genetic data for psychiatric disease. The basic idea is that individual studies are generally too small to identify robust and replicable associations. Meta-analysis is a widely-used technique that can combine information across studies.
The PGC has focused on five critically-important disorders: autism, attention-deficit hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia. They have also done the initial “cross-disorder” analysis to look for genetic variants that predispose to multiple disorders. Additional GWAS data may become available for other disorders like anorexia nervosa (AN), Tourette syndrome (TS), and obsessive-compuls ive disorder (OCD). The initial intent of the PGC was to investigate the common single nucleotide polymorphisms (SNPs) genotyped on commercial arrays. The focus has expanded to include structural variation (copy number variation) and uncommon or rare genetic variation. To participate you are asked to upload the data from your study to the central computer used by this consortium. The Genetic Cluster Computer will serve as the data warehouse and analytical platform for this study ( http://www.geneticcluster.org). When the data from your study have been incorporated, your analyst will get an account on the central server and access to all GWAS genotypes, phenotypes, and meta-analytic results relevant to the data you deposited and the aims in which you participate. The appropriate people from your group will also become members of the relevant working groups. These steps will occur as soon as possible (under a week). It is understood that groups will share their data with the PGC at a time that is appropriate for them and their study. Published PGC results can be viewed using "ricopili", a web site that generates high-resolution images of PGC results. This web resource takes as input a gene name or genomic region, and produces a plot of PGC findings in genomic context. Results files can be obtained by any PGC member for any disease to which they contributed data. These files can also be obtained by application to the NIMH Genetics Repository.
|
| ExampleImage | |
| Has default formThis property is a special property in this wiki. | Resource + |
| Has role | Computational hosting +, Data or information resource +, and Community building portal + |
| Id | nlx_143769 + |
| Is part of | University of North Carolina at Chapel Hill; North Carolina; USA + |
| Keywords | Structural variation +, Genetic variation +, Single nucleotide polymorphism +, Attention deficit-hyperactivity disorder +, Bipolar Disorder +, Schizophrenia +, Mental disease +, One Mind PTSD Resource +, Data sharing +, Visualization +, Genome-wide association study +, Genomic +, Genotype +, Phenotype +, Psychiatry +, GWAS +, and Copy number variation + |
| Label | Resource:Psychiatric Genomics Consortium + |
| ModifiedDate | 9 May 2013 + |
| PMID | 20955924, 19895722, 19648536, 19339359, 19002139, + |
| Page has default formThis property is a special property in this wiki. | Resource + |
| RelatedTo | Resource:Ricopili +, Resource:GWAS: Catalog of Published Genome-Wide Association Studies +, Resource:dbGaP at NCBI +, and Resource:Wellcome Trust Case Control Consortium + |
| Related disease | Mental disease +, Attention deficit-hyperactivity disorder +, Bipolar Disorder +, Schizophrenia +, Major Depressive Disorder +, Autistic Disorder +, and Cross-disorder + |
| Species | Human + |
| SuperCategory | Resource + |
| Supporting Agency | A wide range of national international and commercial funders +, National Institute of Mental Health +, Netherlands Genetic Cluster Computer +, and Hersenstichting Nederland + |
| Synonym | Psychiatric GWAS Consortium + |
| PGC_Consortium + |



Edit