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Resource:RatMine

Name: Resource:RatMine
Description: RatMine integrates data from RGD, UniProtKB, NCBI, KEGG and other sources to form a web-based data warehouse and tool set tailored for rat based data research. Search RatMine by entering names, identifiers, or keywords for genes, proteins, pathways, papers, etc. Additionally, we support programmatic access to our data through Application Programming Interface - choose from Perl or Java API.

RatMine is a data warehouse that integrates many diverse biological data sets. The main focus is R. norvegicus genomics and proteomics. By integrating such data into one place it is possible to construct queries across domains of biological knowledge. The RatMine user interface is designed to go beyond simply looking up an identifier and viewing a report page. Some of the features include:

  • Quick Search is available just like on other sites, type in an identifier to see a report page.
  • Template queries are 'canned' queries that provide a simple form to perform a specific task. You can create your own templates if you log in.
  • Lists lets you operate on whole lists of data at once. You can upload lists or save them from results tables. We also create useful public lists for everyone to use.
  • MyMine lets you create an account to save your own queries, bags and templates, as well as marking public templates as favorites.
Parent Organization: Medical College of Wisconsin; Wisconsin; USA
Resource Type(s): Web accessible database, Web service, Data analysis service
Resource: Resource
URL: http://ratmine.mcw.edu/ratmine/begin.do
*Id: nlx_21635
Keywords: disease, interaction, proteins, single nucleotide, gene ontology, mammalian phenotype, publication, genomics, pathway, quantitative trait loci
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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Notes

This page uses this default form:Resource

hasTwitter @RatMine

Contributors

Aarnaud, Jcachat, Zaidaziz



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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:RatMineRDF feed
CurationStatuscurated  +
DefiningCitationhttp://ratmine.mcw.edu/ratmine/begin.do  +
DefinitionRatMine integrates data from RGD, UniProtK RatMine integrates data from RGD, UniProtKB, NCBI, KEGG and other sources to form a web-based data warehouse and tool set tailored for rat based data research. Search RatMine by entering names, identifiers, or keywords for genes, proteins, pathways, papers, etc. Additionally, we support programmatic access to our data through Application Programming Interface - choose from Perl or Java API.

RatMine is a data warehouse that integrates many diverse biological data sets. The main focus is R. norvegicus genomics and proteomics. By integrating such data into one place it is possible to construct queries across domains of biological knowledge. The RatMine user interface is designed to go beyond simply looking up an identifier and viewing a report page. Some of the features include:

  • Quick Search is available just like on other sites, type in an identifier to see a report page.
  • Template queries are 'canned' queries that provide a simple form to perform a specific task. You can create your own templates if you log in.
  • Lists lets you operate on whole lists of data at once. You can upload lists or save them from results tables. We also create useful public lists for everyone to use.
  • MyMine lets you create an account to save your own queries, bags and templates, as well as marking public templates as favorites. as marking public templates as favorites.
ExampleImageRatMine.png  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleWeb accessible database  +, Web service  +, and Data analysis service  +
Idnlx_21635  +
Is part ofMedical College of Wisconsin; Wisconsin; USA  +
KeywordsDisease  +, Interaction  +, Proteins  +, Single nucleotide  +, Gene ontology  +, Mammalian phenotype  +, Publication  +, Genomics  +, Pathway  +, and Quantitative trait loci  +
LabelResource:RatMine  +
ModifiedDate7 June 2011  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +