Resource:RatMine

From NeuroLex

Quality page [view draft]

This is the latest quality revision, approved on 7 June 2011. The draft has 1 change awaiting review.

Accuracy	Curated
Depth	Limited
Readability	Default

Jump to: navigation, search

Resource:RatMine

Basic
Advanced

Name:	Resource:RatMine
Description:	RatMine integrates data from RGD, UniProtKB, NCBI, KEGG and other sources to form a web-based data warehouse and tool set tailored for rat based data research. Search RatMine by entering names, identifiers, or keywords for genes, proteins, pathways, papers, etc. Additionally, we support programmatic access to our data through Application Programming Interface - choose from Perl or Java API. RatMine is a data warehouse that integrates many diverse biological data sets. The main focus is R. norvegicus genomics and proteomics. By integrating such data into one place it is possible to construct queries across domains of biological knowledge. The RatMine user interface is designed to go beyond simply looking up an identifier and viewing a report page. Some of the features include: Quick Search is available just like on other sites, type in an identifier to see a report page. Template queries are 'canned' queries that provide a simple form to perform a specific task. You can create your own templates if you log in. Lists lets you operate on whole lists of data at once. You can upload lists or save them from results tables. We also create useful public lists for everyone to use. MyMine lets you create an account to save your own queries, bags and templates, as well as marking public templates as favorites.
Parent Organization:	Medical College of Wisconsin; Wisconsin; USA
Resource Type(s):	Web accessible database, Web service, Data analysis service
Keywords:	disease, interaction, proteins, single nucleotide, gene ontology, mammalian phenotype, publication, genomics, pathway, quantitative trait loci
Resource:	Resource
URL:	http://ratmine.mcw.edu/ratmine/begin.do
Id:	nlx_21635
Link to OWL / RDF:	Download this content as OWL/RDF

Curation status: Uncurated

This resource will be curated within 7 days.

For Resource Owners:
After the resource is curated, you may create a sitemap, which will help keep your registry description up-to-date and inform search engines about your resource.

Note: For a new resource, the website's URL must first be verified by a NIF curator before you may proceed.

Learn more about what NIF can do for your resource.
Proudly proclaim your inclusion in NIF by displaying the "Registered with NIF" button on your site. Please login to create the sitemap. (top right)

Notes

This page uses this default form:Resource

hasTwitter @RatMine

Contributors

Aarnaud, Jcachat, Zaidaziz

Facts about Resource:RatMineRDF feed

CurationStatus	curated +
DefiningCitation	http://ratmine.mcw.edu/ratmine/begin.do  +
Definition	RatMine integrates data from RGD, UniProtK … RatMine integrates data from RGD, UniProtKB, NCBI, KEGG and other sources to form a web-based data warehouse and tool set tailored for rat based data research. Search RatMine by entering names, identifiers, or keywords for genes, proteins, pathways, papers, etc. Additionally, we support programmatic access to our data through Application Programming Interface - choose from Perl or Java API. RatMine is a data warehouse that integrates many diverse biological data sets. The main focus is R. norvegicus genomics and proteomics. By integrating such data into one place it is possible to construct queries across domains of biological knowledge. The RatMine user interface is designed to go beyond simply looking up an identifier and viewing a report page. Some of the features include: Quick Search is available just like on other sites, type in an identifier to see a report page. Template queries are 'canned' queries that provide a simple form to perform a specific task. You can create your own templates if you log in. Lists lets you operate on whole lists of data at once. You can upload lists or save them from results tables. We also create useful public lists for everyone to use. MyMine lets you create an account to save your own queries, bags and templates, as well as marking public templates as favorites. as marking public templates as favorites.
ExampleImage	+
Has default formThis property is a special property in this wiki.	Resource +
Has role	Web accessible database +, Web service +, and Data analysis service +
Id	nlx_21635 +
Is part of	Medical College of Wisconsin; Wisconsin; USA +
Keywords	Disease +, Interaction +, Proteins +, Single nucleotide +, Gene ontology +, Mammalian phenotype +, Publication +, Genomics +, Pathway +, and Quantitative trait loci +
Label	Resource:RatMine +
ModifiedDate	7 June 2011 +
Page has default formThis property is a special property in this wiki.	Resource +
SuperCategory	Resource +