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Resource:Secondary Structure Matching

Name: Resource:Secondary Structure Matching
Description:

Secondary Structure Matching (SSM) is an interactive service for comparing protein structures in 3D. SSM compares to other protein matching services, see results here. It is used as a structure search engine in PISA service (Protein Interfaces, Surfaces and Assemblies). It queries may be launched from any web site, see instructions here and it is based on the CCP4 Coordinate Library, found here.
The service provides for:
-pairwise comparison and 3D alignment of protein structures
-multiple comparison and 3D alignment of protein structures
-examination of a protein structure for similarity with the whole PDB or SCOP archives
-best Ca-alignment of compared structures
-download and visualization of best-superposed structures using Rasmol (Unix/Linux platforms), Rastop (MS Windows machines) and Jmol (platform-independent server-side java viewer)
-linking the results to other services - PDBe Motif, OCA, SCOP, GeneCensus, FSSP, 3Dee, CATH, PDBSum, SWISS-PROT and ProtoMap.

Sponsors: The project is funded by the Collaborative Computational Project Number 4 in Protein Crystallography of the Biotechnology and Biological Sciences Research Council
Other Name(s): SSM
Parent Organization: European Molecular Biology Laboratory
Resource Type(s): Database
Keywords: alignment 3d, compare, interactive, interface, matching, multiple, pairwise, protein, secondary, structure, visualization
Resource: Resource
URL: http://www.ebi.ac.uk/msd-srv/ssm/
Id: nif-0000-25563
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

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Contributors

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Facts about Resource:Secondary Structure MatchingRDF feed
CurationStatuscurated  +
DefiningCitationhttp://www.ebi.ac.uk/msd-srv/ssm/  +
Definition

Secondary Structure Matching (SSM)
Secondary Structure Matching (SSM) is an interactive service for comparing protein structures in 3D. SSM compares to other protein matching services, see results here. It is used as a structure search engine in PISA service (Protein Interfaces, Surfaces and Assemblies). It queries may be launched from any web site, see instructions here and it is based on the CCP4 Coordinate Library, found here.
The service provides for:
-pairwise comparison and 3D alignment of protein structures
-multiple comparison and 3D alignment of protein structures
-examination of a protein structure for similarity with the whole PDB or SCOP archives
-best Ca-alignment of compared structures
-download and visualization of best-superposed structures using Rasmol (Unix/Linux platforms), Rastop (MS Windows machines) and Jmol (platform-independent server-side java viewer)
-linking the results to other services - PDBe Motif, OCA, SCOP, GeneCensus, FSSP, 3Dee, CATH, PDBSum, SWISS-PROT and ProtoMap.

Sponsors: The project is funded by the Collaborative Computational Project Number 4 in Protein Crystallography of the Biotechnology and Biological Sciences Research Council
Biological Sciences Research Council
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +
Idnif-0000-25563  +
Is part ofEuropean Molecular Biology Laboratory  +
KeywordsAlignment 3d  +, Compare  +, Interactive  +, Interface  +, Matching  +, Multiple  +, Pairwise  +, Protein  +, Secondary  +, Structure  +, and Visualization  +
LabelResource:Secondary Structure Matching  +
ModifiedDate17 June 2013  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
SynonymSSM  +