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Resource:Chromosome 7 Annotation Project

Name: Resource:Chromosome 7 Annotation Project
Description: Database containing the DNA sequence and annotation of the entire human chromosome 7, encompassing nearly 158 million nucleotides of DNA and 1917 gene structures, are presented; the most up to date collation of sequence, gene, and other annotations from all databases (eg. Celera published, NCBI, Ensembl, RIKEN, UCSC) as well as unpublished data. To generate a higher order description, additional structural features such as imprinted genes, fragile sites, and segmental duplications were integrated at the level of the DNA sequence with medical genetic data, including 440 chromosome rearrangement breakpoints associated with disease.

The objective of this project is to generate a comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications. There are over 360 disease-associated genes or loci on chromosome 7.

A major challenge ahead will be to represent chromosome alterations, variants, and polymorphisms and their related phenotypes (or lack thereof), in an accessible way.

In addition to being a primary data source, this site serves as a "weighing station" for testing community ideas and information to produce highly curated data to be submitted to other databases such as NCBI, Ensembl, and UCSC. Therefore, any useful data submitted will be curated and shown in this database.

All Chromosome 7 genomic clones (cosmids, BACs, YACs) listed in GBrowser and in other data tables are freely distributed.
Other Name(s): The Chromosome 7 Annotation Project, Chromosome 7 Annotation Project
Abbreviation: Chromosome 7 Annotation Project
Parent Organization: Hospital for Sick Children (SickKids); Ontario; Canada
Resource Type(s): Database, Data repository
Resource: Resource
URL: http://www.chr7.org
Id: nif-0000-03550
PMID: PMID 12690205
Related to: Resource:One Mind Biospecimen Bank Listing, North American Biobank
Availability: Genomic clones are freely distributed.
Address: Department of Genetics and Genomic Biology, MaRS Centre - East Tower, 101 College Street, Toronto, Ontario, M5G 1L7, Canada
Keywords: duplication, gene expression, family, fish, gene, gene annotation, genome, breakpoint, chromosome, chromosome 7, clinical, deletion, disease, DNA sequence, human, insertion, inversion, polymorphism, rearrangement, segmental duplication, SNP, translocation, annotation, Data analysis service, BLAT, cosmid, BAC, YAC, Biomaterial supply resource, malignant, non malignant
Organism: Human
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Uncurated

This resource will be curated within 7 days.

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Notes

This page uses this default form:Resource

Contributors

Aarnaud, Akash, Ccdbuser



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Facts about Resource:Chromosome 7 Annotation ProjectRDF feed
AbbrevChromosome 7 Annotation Project  +
AddressDepartment of Genetics and Genomic Biology  +, MaRS Centre - East Tower  +, 101 College Street  +, Toronto  +, Ontario  +, M5G 1L7  +, and Canada  +
AvailabilityGenomic clones are freely distributed.  +
CommentSample type: genomic clone, cosmid, BAC, YAC
CurationStatuscurated  +
DefiningCitationhttp://www.chr7.org  +
DefinitionDatabase containing the DNA sequence and a Database containing the DNA sequence and annotation of the entire human chromosome 7, encompassing nearly 158 million nucleotides of DNA and 1917 gene structures, are presented; the most up to date collation of sequence, gene, and other annotations from all databases (eg. Celera published, NCBI, Ensembl, RIKEN, UCSC) as well as unpublished data. To generate a higher order description, additional structural features such as imprinted genes, fragile sites, and segmental duplications were integrated at the level of the DNA sequence with medical genetic data, including 440 chromosome rearrangement breakpoints associated with disease.

The objective of this project is to generate a comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications. There are over 360 disease-associated genes or loci on chromosome 7.

A major challenge ahead will be to represent chromosome alterations, variants, and polymorphisms and their related phenotypes (or lack thereof), in an accessible way.

In addition to being a primary data source, this site serves as a "weighing station" for testing community ideas and information to produce highly curated data to be submitted to other databases such as NCBI, Ensembl, and UCSC. Therefore, any useful data submitted will be curated and shown in this database.

All Chromosome 7 genomic clones (cosmids, BACs, YACs) listed in GBrowser and in other data tables are freely distributed.
other data tables are freely distributed.
ExampleImageChromosome 7 Annotation Project.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleDatabase  +, and Data repository  +
Idnif-0000-03550  +
Is part ofHospital for Sick Children (SickKids); Ontario; Canada  +
KeywordsDuplication  +, Gene expression  +, Family  +, Fish  +, Gene  +, Gene annotation  +, Genome  +, Breakpoint  +, Chromosome  +, Chromosome 7  +, Clinical  +, Deletion  +, Disease  +, DNA sequence  +, Human  +, Insertion  +, Inversion  +, Polymorphism  +, Rearrangement  +, Segmental duplication  +, SNP  +, Translocation  +, Annotation  +, Data analysis service  +, BLAT  +, Cosmid  +, BAC  +, YAC  +, Biomaterial supply resource  +, Malignant  +, and Non malignant  +
LabelResource:Chromosome 7 Annotation Project  +
ModifiedDate30 May 2013  +
PMID12690205  +
Page has default formThis property is a special property in this wiki.Resource  +
RelatedToResource:One Mind Biospecimen Bank Listing  +, and North American Biobank  +
SpeciesHuman  +
SuperCategoryResource  +
SynonymThe Chromosome 7 Annotation Project  +, and Chromosome 7 Annotation Project  +