pdb_extract (for workstation) - Tools and examples for extracting mmCIF data from structure determination applications
ADIT (for workstation) - A web-based package for preparing, editing and checking structure data entries
Data Format Conversion Tools
PDBML2CIF - A tool for converting PDBML data files into mmCIF data files
CIFTr - A tool for translating mmCIF data files into PDB format
MAXIT - An application for processing and annotating of macromolecular structure data
sf-convert - A format conversion tool for structure factor files that supports more than a dozen file formats
MMCIF Dictionary Suite - Collection of tools to parse, validate, manage data dictionaries used by the PDB. Applications are also included, which convert data dictionaries to XML schema, provide HTML browsing, produce mapping information for relational database loaders (Db Loader) and convert data files between related CIF dialects
Data Validation Tools
PDB Validation Suite - tools for processing and checking structure data
Data Parsing Tools
CIFPARSE-OBJ - A Class Library of Access Tools for mmCIF in C
CIFPARSE - A C Library of Access Tools for mmCIF in C (no longer maintained)
STAR (CIF) - Parser Several object-oriented Perl modules to parse mmCIF data files
Dictionary and Data Management Tools
DICT-OBJ-FILE - A Class Library of mmCIF Dictionary Access Tools (formerly known as CIFOBJ)
CIFTABLE (ISTable) - A Class Library of Table Access Tools for mmCIF data
Db Loader - An application to load mmCIF data into relational databases and XML (formerly known as mmcif-loader)
Other Software Tools
PointSuite – generate BIOMT and CIF symmetry records for macromolecular assemblies with point and helical symmetries
mmLIB - a Python macromolecular toolkit (including support for mmCIF)
BioPython - Python toolkit for computational biology (including support for mmCIF)
XML2PDB - an open-source C program for converting XML to PDB format
OOSTAR - Applications to Manipulate STAR Files (Objective-C)
OpenRasMol - Open source versions of RasMol (with CIF support)
CBFLib - A library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files
cif2pdb - Program to Convert mmCIF to pseudo-PDB Format
CIFtbx2 - Extended CIF Tool Box (Fortran) with CYCLOPS and cif2cif
pdb2cif - Scripts to Filter a PDB Entry and Produce mmCIF
CIFLIB - C Language Application Program Interface (no longer supported)
OpenMMS Toolkit - A suite of Java source code that includes an mmCIF parser, RDBMS loader, XML translator, and Corba server (no longer supported)
Software tools made available through the … Software tools made available through the RCBS.
Data Extraction and Deposition Preparation Tools
pdb_extract (for workstation) - Tools and examples for extracting mmCIF data from structure determination applications
ADIT (for workstation) - A web-based package for preparing, editing and checking structure data entries
Data Format Conversion Tools
PDBML2CIF - A tool for converting PDBML data files into mmCIF data files
CIFTr - A tool for translating mmCIF data files into PDB format
MAXIT - An application for processing and annotating of macromolecular structure data
sf-convert - A format conversion tool for structure factor files that supports more than a dozen file formats
MMCIF Dictionary Suite - Collection of tools to parse, validate, manage data dictionaries used by the PDB. Applications are also included, which convert data dictionaries to XML schema, provide HTML browsing, produce mapping information for relational database loaders (Db Loader) and convert data files between related CIF dialects
Data Validation Tools
PDB Validation Suite - tools for processing and checking structure data
Data Parsing Tools
CIFPARSE-OBJ - A Class Library of Access Tools for mmCIF in C
CIFPARSE - A C Library of Access Tools for mmCIF in C (no longer maintained)
STAR (CIF) - Parser Several object-oriented Perl modules to parse mmCIF data files
Dictionary and Data Management Tools
DICT-OBJ-FILE - A Class Library of mmCIF Dictionary Access Tools (formerly known as CIFOBJ)
CIFTABLE (ISTable) - A Class Library of Table Access Tools for mmCIF data
Db Loader - An application to load mmCIF data into relational databases and XML (formerly known as mmcif-loader)
Other Software Tools
PointSuite – generate BIOMT and CIF symmetry records for macromolecular assemblies with point and helical symmetries
mmLIB - a Python macromolecular toolkit (including support for mmCIF)
BioPython - Python toolkit for computational biology (including support for mmCIF)
XML2PDB - an open-source C program for converting XML to PDB format
OOSTAR - Applications to Manipulate STAR Files (Objective-C)
OpenRasMol - Open source versions of RasMol (with CIF support)
CBFLib - A library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files
cif2pdb - Program to Convert mmCIF to pseudo-PDB Format
CIFtbx2 - Extended CIF Tool Box (Fortran) with CYCLOPS and cif2cif
pdb2cif - Scripts to Filter a PDB Entry and Produce mmCIF
CIFLIB - C Language Application Program Interface (no longer supported)
OpenMMS Toolkit - A suite of Java source code that includes an mmCIF parser, RDBMS loader, XML translator, and Corba server (no longer supported)
d Corba server (no longer supported)
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