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Resource:V3D

Name: Resource:V3D
Description: V3D is a handy, fast, and versatile 3D/4D/5D Image Visualization & Analysis System for Bioimages & Surface Objects. It also provides many unique functions, is Open Source, supports a very simple and powerful plugin interface and thus can be extended & enhanced easily.

V3D-Neuron is a powerful 3D neuron reconstruction, visualization, and editing software built on top of V3D. Both V3D and V3D-Neuron have recently been published in Nature Biotechnology (April, 2010), and Highlighted in Nature Methods (May, 2010), and Science News (April, 2010), etc.

V3D is a cross-platform (Mac, Linux, and Windows) tool for visualizing large-scale (gigabytes, and 64-bit data) 3D image stacks and various surface data. It is also a container of powerful modules for 3D image analysis (cell segmentation, neuron tracing, brain registration, annotation, quantitative measurement and statistics, etc) and data management. This makes V3D suitable for various bioimage informatics applications, and a nice platform to develop new 3D image analysis algorithms for high-throughput processing. In short, V3D streamlines the workflow of visualization-assisted analysis.

In the latest V3D development, it can render 5D (spatial-temporal) data directly in 3D volume-rendering mode; it supports convenient and interactive local and global 3D views at different scales. It even has a Matlab file IO toolbox. A user can now write his/her own plugins to take advantage of the V3D platform very easily.
Other Name(s): V3D: A Swiss army knife for bioimage visualization & analysis
Abbreviation: V3D
Parent Organization: Resource:HHMI Janelia Farm Research Campus
Supporting Agency: Howard hughes medical institute
Resource Type(s): Image analysis software, Data visualization software, 4D visualization software, 3D visualization software, data visualization software, Segmentation software
Resource: Resource
URL: http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html
Id: nif-0000-32975
PMID: PMID 20231818
Keywords: 3d, annotation, bioimage, brain, cell, development, informatics, neuron, registration, segmentation, software, tracing, visual, visualization, image
Link to OWL / RDF: Download this content as OWL/RDF

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Facts about Resource:V3DRDF feed
AbbrevV3D  +
CurationStatusuncurated  +
DefiningCitationhttp://penglab.janelia.org/proj/v3d/V3D/About_V3D.html  +
DefinitionV3D is a handy, fast, and versatile 3D/4D/ V3D is a handy, fast, and versatile 3D/4D/5D Image Visualization & Analysis System for Bioimages & Surface Objects. It also provides many unique functions, is Open Source, supports a very simple and powerful plugin interface and thus can be extended & enhanced easily.

V3D-Neuron is a powerful 3D neuron reconstruction, visualization, and editing software built on top of V3D. Both V3D and V3D-Neuron have recently been published in Nature Biotechnology (April, 2010), and Highlighted in Nature Methods (May, 2010), and Science News (April, 2010), etc.

V3D is a cross-platform (Mac, Linux, and Windows) tool for visualizing large-scale (gigabytes, and 64-bit data) 3D image stacks and various surface data. It is also a container of powerful modules for 3D image analysis (cell segmentation, neuron tracing, brain registration, annotation, quantitative measurement and statistics, etc) and data management. This makes V3D suitable for various bioimage informatics applications, and a nice platform to develop new 3D image analysis algorithms for high-throughput processing. In short, V3D streamlines the workflow of visualization-assisted analysis.

In the latest V3D development, it can render 5D (spatial-temporal) data directly in 3D volume-rendering mode; it supports convenient and interactive local and global 3D views at different scales. It even has a Matlab file IO toolbox. A user can now write his/her own plugins to take advantage of the V3D platform very easily.
age of the V3D platform very easily.
ExampleImageV3D.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has roleImage analysis software  +, Data visualization software  +, 4D visualization software  +, 3D visualization software  +, and Segmentation software  +
Idnif-0000-32975  +
Is part ofResource:HHMI Janelia Farm Research Campus  +
Keywords3d  +, Annotation  +, Bioimage  +, Brain  +, Cell  +, Development  +, Informatics  +, Neuron  +, Registration  +, Segmentation  +, Software  +, Tracing  +, Visual  +, Visualization  +, and Image  +
LabelResource:V3D  +
ModifiedDate16 September 2011  +
PMID20231818  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
Supporting AgencyHoward hughes medical institute  +
SynonymV3D: A Swiss army knife for bioimage visualization & analysis  +