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Resource:Volume image object AnNOtation System

Name: Resource:Volume image object AnNOtation System
Description: VANO is a Volume image object AnNOtation System for 3D multicolor image stacks, developed by Hanchuan Peng, Fuhui Long, and Gene Myers. VANO provides a well-coordinated way to annotate hundreds or thousands of 3D image objects. It combines 3D views of images and spread sheet neatly, and is just easy to manage 3D segmented image objects. It also lets you incorporate your segmentation priors, and lets you edit your segmentation results!

This system has been used in building the first digital nuclei atlases of C. elegans at the post-embryonic stage (joint work with Stuart Kim lab, Stanford Univ), the single-neuron level fruit fly neuronal atlas of late embryos (with Chris Doe lab, Univ of Oregon, HHMI), and the compartment-level of digital map(s) of adult fruit fly brains (several labs at Janelia Farm, HHMI).

VANO is cross-platform software. Currently the downloadable versions are for Windows (XP and Vista) and Mac (Intel-chip based, Leopard or Tiger OS). If you need VANO for different systems (such as 64bit or 32bit, Redhat Linux, Ubuntu, etc), you can either compile the software, or send an email to pengh (at) janelia.hhmi.org. VANO is Open-Source. You can download both the source code files and pre-complied versions at the Software Downloads page.
Other Name(s): VANO - Volume image object AnNOtation System, Volume-object annotation system (VANO)
Parent Organization: Resource:HHMI Janelia Farm Research Campus
Resource Type(s): 3D visualization software, Image processing software, Source code
Keywords: embryo, fruit fly, 3d, annotation, atlas, brain, neuron, neuronal, object, segmentation, software, image, nucleus, cell
Abbreviation: VANO
Resource: Resource
URL: http://vano.cellexplorer.org/
PMID: PMID 19189978
Publication link: http://bioinformatics.oxfordjournals.org/content/25/5/695.full
Availability: Open source - please cite; needs a special license for any commercial purpose.
Address: Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, VA, USA.
Id: nif-0000-32984
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Facts about Resource:Volume image object AnNOtation SystemRDF feed
AbbrevVANO  +
AddressJanelia Farm Research Campus  +, Howard Hughes Medical Institute  +, Ashburn  +, Virginia  +, VA  +, and USA.  +
AvailabilityOpen source - please cite; needs a special license for any commercial purpose.  +
CurationStatuscurated  +
DefiningCitationhttp://vano.cellexplorer.org/  +
DefinitionVANO is a Volume image object AnNOtation S VANO is a Volume image object AnNOtation System for 3D multicolor image stacks, developed by Hanchuan Peng, Fuhui Long, and Gene Myers. VANO provides a well-coordinated way to annotate hundreds or thousands of 3D image objects. It combines 3D views of images and spread sheet neatly, and is just easy to manage 3D segmented image objects. It also lets you incorporate your segmentation priors, and lets you edit your segmentation results!

This system has been used in building the first digital nuclei atlases of C. elegans at the post-embryonic stage (joint work with Stuart Kim lab, Stanford Univ), the single-neuron level fruit fly neuronal atlas of late embryos (with Chris Doe lab, Univ of Oregon, HHMI), and the compartment-level of digital map(s) of adult fruit fly brains (several labs at Janelia Farm, HHMI).

VANO is cross-platform software. Currently the downloadable versions are for Windows (XP and Vista) and Mac (Intel-chip based, Leopard or Tiger OS). If you need VANO for different systems (such as 64bit or 32bit, Redhat Linux, Ubuntu, etc), you can either compile the software, or send an email to pengh (at) janelia.hhmi.org. VANO is Open-Source. You can download both the source code files and pre-complied versions at the Software Downloads page.
d versions at the Software Downloads page.
ExampleImageVANO.PNG  +
Has default formThis property is a special property in this wiki.Resource  +
Has role3D visualization software  +, Image processing software  +, and Source code  +
Idnif-0000-32984  +
Is part ofResource:HHMI Janelia Farm Research Campus  +
KeywordsEmbryo  +, Fruit fly  +, 3d  +, Annotation  +, Atlas  +, Brain  +, Neuron  +, Neuronal  +, Object  +, Segmentation  +, Software  +, Image  +, Nucleus  +, and Cell  +
LabelResource:Volume image object AnNOtation System  +
ModifiedDate24 October 2012  +
PMID19189978  +
Page has default formThis property is a special property in this wiki.Resource  +
PublicationLinkhttp://bioinformatics.oxfordjournals.org/content/25/5/695.full  +
SuperCategoryResource  +
SynonymVANO - Volume image object AnNOtation System  +, and Volume-object annotation system (VANO)  +