arrow

From NeuroLex

Jump to: navigation, search



Resource:genomics Workbench

Name: Resource:genomics Workbench
Description: geWorkbench (genomics Workbench) is a Java-based open-source platform for integrated genomics. Using a component architecture it allows individually developed plug-ins to be configured into complex bioinformatic applications. At present there are more than 70 available plug-ins supporting the visualization and analysis of gene expression and sequence data. Example use cases include:
  • loading data from local or remote data sources.
  • visualizing gene expression, molecular interaction networks, protein sequence and protein structure data in a variety of ways.
  • providing access to client- and server-side computational analysis tools such as t-test analysis, hierarchical clustering, self organizing maps, regulatory networks reconstruction, BLAST searches, pattern/motif discovery, etc.
  • validating computational hypothesis through the integration of gene and pathway annotation information from curated sources as well as through Gene Ontology enrichment analysis.
geWorkbench is the Bioinformatics platform of MAGNet, the National Center for the Multi-scale Analysis of Genomic and Cellular Networks (one of the 7 National Centers for Biomedial Computing funded through the NIH Roadmap). Additionally, geWorkbench is supported by caBIG, NCI's cancer Biomedical Informatics Grid initiative.
Other Name(s): geWorkbench
Parent Organization: Columbia University; New York; USA
Supporting Agency: NIH, caBIG
Resource Type(s): Software resource, Data analysis software, Data processing software, Data visualization software
Resource: Resource
URL: http://www.geworkbench.org
*Id: nif-0000-00306
Link to OWL / RDF: Download this content as OWL/RDF

Categories related to Resource:genomics Workbench

Resource:MAGNet - Multiscale Analysis of Genomic and Cellular Networks

Curation status: Curated

For Resource Owners:

A sitemap will keep your NIF Registry description up-to-date and inform search engines about your resource.

Please login to create the sitemap. (top right)

Learn more about what NIF can do for your resource.
Proudly proclaim your inclusion in NIF by displaying the "Registered with NIF" button on your site.

Notes

This page uses this default form:Resource

Contributors

Aarnaud, Ccdbuser, Nifbot2



bookmark

*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.

Facts about Resource:genomics WorkbenchRDF feed
DefiningCitationhttp://www.geworkbench.org  +
DefinitiongeWorkbench (genomics Workbench) is a Java geWorkbench (genomics Workbench) is a Java-based open-source platform for integrated genomics. Using a component architecture it allows individually developed plug-ins to be configured into complex bioinformatic applications. At present there are more than 70 available plug-ins supporting the visualization and analysis of gene expression and sequence data. Example use cases include:
  • loading data from local or remote data sources.
  • visualizing gene expression, molecular interaction networks, protein sequence and protein structure data in a variety of ways.
  • providing access to client- and server-side computational analysis tools such as t-test analysis, hierarchical clustering, self organizing maps, regulatory networks reconstruction, BLAST searches, pattern/motif discovery, etc.
  • validating computational hypothesis through the integration of gene and pathway annotation information from curated sources as well as through Gene Ontology enrichment analysis.
geWorkbench is the Bioinformatics platform of MAGNet, the National Center for the Multi-scale Analysis of Genomic and Cellular Networks (one of the 7 National Centers for Biomedial Computing funded through the NIH Roadmap). Additionally, geWorkbench is supported by caBIG, NCI's cancer Biomedical Informatics Grid initiative.
er Biomedical Informatics Grid initiative.
Has default formThis property is a special property in this wiki.Resource  +
Has roleSoftware resource  +, Data analysis software  +, Data processing software  +, and Data visualization software  +
Idnif-0000-00306  +
Is part ofColumbia University; New York; USA  +
LabelResource:genomics Workbench  +
ModifiedDate8 June 2011  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
Supporting AgencyNIH  +, and CaBIG  +
SynonymgeWorkbench  +