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Resource:pTARGET

Name: Resource:pTARGET
Description: pTARGET is a computational method to predict the subcellular localization of only eukaryotic proteins from animal species that include fungi and metazoans. Predictions are carried out based on the occurrence patterns of protein functional domains and the amino acid compositional differences in proteins from different subcellular locations.

This method can predict proteins targeted to nine distinct subcellular locations that include cytoplasm, endoplasmic reticulum, extracellular/secreted, Golgi, lysosomes, mitochondria, nucleus, peroxysomes and plasma membrane. Current predictions are based on Pfam database version 19.0.

Datasets used for developing pTarget method are available.
Other Name(s): pTARGET: Prediction server for protein subcellular localization
Abbreviation: pTARGET
Parent Organization: University at Albany; New York; USA
Supporting Agency: University at Albany; New York; USA, University of California Life Sciences Informatics (LSI) Program/Mitokor
Grant: L99-10077
Resource Type(s): Data analysis service, Data set
Resource: Resource
URL: http://bioapps.rit.albany.edu/pTARGET/
Id: nlx_18589
PMID: PMID 16844995, 16144808,
Link to OWL / RDF: Download this content as OWL/RDF

Curation status: Curated

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Notes

This page uses this default form:Resource

Contributors

Aarnaud, Akash, Zaidaziz



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Facts about Resource:pTARGETRDF feed
AbbrevpTARGET  +
CurationStatusuncurated  +
DefiningCitationhttp://bioapps.rit.albany.edu/pTARGET/  +
DefinitionpTARGET is a computational method to predi pTARGET is a computational method to predict the subcellular localization of only eukaryotic proteins from animal species that include fungi and metazoans. Predictions are carried out based on the occurrence patterns of protein functional domains and the amino acid compositional differences in proteins from different subcellular locations.

This method can predict proteins targeted to nine distinct subcellular locations that include cytoplasm, endoplasmic reticulum, extracellular/secreted, Golgi, lysosomes, mitochondria, nucleus, peroxysomes and plasma membrane. Current predictions are based on Pfam database version 19.0.

Datasets used for developing pTarget method are available.
r developing pTarget method are available.
GrantCategory:L99-10077   +
Has default formThis property is a special property in this wiki.Resource  +
Has roleData analysis service  +, and Data set  +
Idnlx_18589  +
Is part ofUniversity at Albany; New York; USA  +
LabelResource:pTARGET  +
ModifiedDate15 July 2011  +
PMID16844995, 16144808,  +
Page has default formThis property is a special property in this wiki.Resource  +
SuperCategoryResource  +
Supporting AgencyUniversity at Albany; New York; USA  +, and University of California Life Sciences Informatics (LSI) Program/Mitokor  +
SynonympTARGET: Prediction server for protein subcellular localization  +