NIF Navigator

Data Type

Nervous System Level

NIF Registry ()

Literature ()

arrow

From NeuroLex

Jump to: navigation, search



Software application

Name: Software application
Description: Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions. (derived from Wikipedia, Nov 1, 2007) NITRC definition: Software programs designed to run on a computer.
Synonym(s): Application, Binary executable, Software program
Super-category: Software resource
Id: birnlex_11012
Link to OWL / RDF: Download this content as OWL/RDF

Categories with role Software application

Resource:ANTS - Advanced Normalization ToolS, Resource:Alfresco - FRont-End for Sequence COmparison, Resource:Alien hunter, Resource:Allen Brain Atlas API, Resource:AmiGO, Resource:ArchSchema, Resource:BioLit, Resource:BioMail, Resource:BioMart Project, Resource:Biological Expression Language Framework, Resource:Bioscholar, Resource:Blast2GO, Resource:Booly: A Resource for Biological Data Integration, Resource:Brain atlases, Resource:BrainLiner, Resource:BrainVoyager Brain Tutor, Resource:CATMAID, Resource:CBS Prediction Servers, Resource:COEUS, Resource:COnsensus-DEgenerate Hybride Oligonucleotide Primers, Resource:Clinical Trial Management Application, Resource:DAVID, Resource:DBD - Slim Gene Ontology, Resource:DSpace, Resource:Dataverse Network Project, Resource:Db for Dummies!, Resource:Debian, Resource:EagleI, Resource:EarLab, Resource:Exploring Genes Using Functional Disease Ontology Annotations, Resource:FSST - Functional Similarity Search Tool, Resource:Genboree Discovery System, Resource:GeneMerge, Resource:Genes to Cognition Online, Resource:Geriatric Depression Scale, Resource:GoSurfer, Resource:Hanalyzer, Resource:Hardy-Weinberg Equilibrium Calculator, Resource:Human Protein-Protein Interaction Mining Tool, Resource:IgBLAST, Resource:Integrated Content Environment, Resource:KegTools, Resource:Knowledge Engineering from Experimental Design, Resource:LONI Pipeline Processing Environment, Resource:LONI Software Applications, Resource:NCI Flicker Web Server., Resource:Neurogenetics Online, Resource:Neurophysiological Data Analysis Package, Resource:OBO-Edit, Resource:PhenoTips, Resource:Power Atlas, Resource:Publish or perish, Resource:Pythonxy, Resource:SHRINE, Resource:Sapienta, Resource:Statistics Online Computational Resource, Resource:Substructure Index-based Approximate Graph Alignment, Resource:TARGETgene, Resource:THOR Center for Neuroinformatics, Resource:TheDataWeb and DataFerrett, Resource:TraDES, Resource:UNAFold, Resource:Utopia Documents, Resource:VIVO, Resource:Wandora, Resource:Wolfram Alpha Computational Knowledge Engine, Resource:Yogo Data Management System, Resource:brainmap.org, Resource:caTRIP, Resource:eCAT electronic lab notebook, Resource:neurodebian, Resource:scrible, Resource:splitneuron have the role Software application



Learn more about what NIF can do for your resource.
Proudly proclaim your inclusion in NIF by displaying the "Registered with NIF" button on your site.

Alt. definition: A resource that provides any tool that functions and is operated by means of a computer, with the purpose of supporting or improving the software user's work. In other words, it is the subclass of computer software that employs the capabilities of a computer directly and thoroughly to a task that the user wishes to perform. This should be contrasted with system software (infrastructure) or middleware (computer services/ processes integrators) which is involved in integrating a computer's various capabilities, but typically does not directly apply them in the performance of tasks that benefit the user. In this context the term application refers to both the application software and its implementation. Example: L-Measure.

|NITRC ID=NITRC_306

Download results

CSV

Table View

Is part of DefiningCitation ExampleImage
Resource:ANTS - Advanced Normalization ToolS University of Pennsylvania; Pennsylvania; USA http://www.picsl.upenn.edu/ANTS/ ANTS.PNG
Resource:Alfresco - FRont-End for Sequence COmparison Wellcome Trust Sanger Institute; Hinxton; United Kingdom http://www.sanger.ac.uk/resources/software/alfresco/
Resource:Alien hunter Wellcome Trust Sanger Institute; Hinxton; United Kingdom http://www.sanger.ac.uk/resources/software/alien_hunter/
Resource:Allen Brain Atlas API Resource:Allen Institute for Brain Science http://www.brain-map.org/api/index.html Allen Brain Atlas API.PNG
Resource:AmiGO Resource:GO http://amigo.geneontology.org/cgi-bin/amigo/go.cgi AmiGO.PNG
Resource:ArchSchema Resource:European Bioinformatics Institute http://www.ebi.ac.uk/thornton-srv/databases/archschema/ ArchSchema.PNG
Resource:BioLit University of California at San Diego; California; USA http://biolit.ucsd.edu/doc/
Resource:BioMail Sourceforce http://biomail.sourceforge.net/biomail/
Resource:BioMart Project Resource:Ontario Institute for Cancer Research
Resource:European Bioinformatics Institute
http://www.biomart.org BioMart.PNG
Resource:Biological Expression Language Framework Selventa http://www.selventa.com/technology/bel-framework
Resource:Bioscholar University of Southern California; California; USA http://www.isi.edu/projects/bioscholar/overview BioScholar.PNG
Resource:Blast2GO Resource:Principe Felipe Research Centre; Valencia; Spain http://www.blast2go.com/b2ghome B2G.PNG
Resource:Booly: A Resource for Biological Data Integration University of California at San Diego; California; USA http://booly.ucsd.edu
Resource:Brain atlases University of California at Davis; California; USA http://brainatlases.ucdavis.edu BrainMaps.org.PNG
Resource:BrainLiner ATR; Kyoto; Japan http://brainliner.jp BrainLiner.PNG
Resource:BrainVoyager Brain Tutor Resource:Brain Innovation: Home of the BrainVoyager Product Family http://www.brainvoyager.com/products/braintutor.html BrainVoyager Brain Tutor.PNG
Resource:CATMAID Max Planck Institute of Molecular Cell Biology and Genetics; Dresden; Germany http://catmaid.org/ CATMAID.PNG
Resource:CBS Prediction Servers Technical University of Denmark; Lyngby; Denmark http://www.cbs.dtu.dk/services/
Resource:COEUS University of Aveiro; Aveiro; Portugal http://bioinformatics.ua.pt/coeus/ COEUS.PNG
Resource:COnsensus-DEgenerate Hybride Oligonucleotide Primers University of Washington; Washington; USA http://blocks.fhcrc.org/blocks/codehop.html
Resource:Clinical Trial Management Application University of Pittsburgh; Pennsylvania; USA http://www.dbmi.pitt.edu/services/ctma.html
Resource:DAVID http://david.abcc.ncifcrf.gov/home.jsp
Resource:DBD - Slim Gene Ontology Resource:Db for Dummies! http://www.dbfordummies.com/go.asp Slim Gene Ontology.PNG
Resource:DSpace Resource:DuraSpace http://www.dspace.org/ DSpace.PNG
Resource:Dataverse Network Project Harvard University; Massachusetts; USA http://thedata.org/home
Resource:Db for Dummies! Custom Microsystems http://www.dbfordummies.com/ DBD.PNG
Resource:Debian Software in the public interest (SPI) http://www.debian.org Debian.PNG
Resource:EagleI Harvard University; Massachusetts; USA
Oregon Health and Science University; Oregon; USA
https://www.eagle-i.net/ Eagle-i.PNG
Resource:EarLab Boston University; Massachusetts; USA http://earlab.bu.edu/ EarLab.PNG
Resource:Exploring Genes Using Functional Disease Ontology Annotations Northwestern University; Illinois; USA http://django.nubic.northwestern.edu/fundo/
Resource:FSST - Functional Similarity Search Tool Max-Planck-Institute for Informatics; Saarbrucken; Germany http://www.gotaxexplorer.de/ FSST.PNG
Resource:Genboree Discovery System Baylor College of Medicine; Texas; USA http://genboree.org
Resource:GeneMerge University of Maryland; Maryland; USA http://genemerge.cbcb.umd.edu/ GeneMerge.PNG
Resource:Genes to Cognition Online Resource:Cold Spring Harbor Laboratory http://www.g2conline.org/
Resource:Geriatric Depression Scale Stanford University School of Medicine; California; USA
Resource:Stanford/VA Aging Clinical Research Center
http://www.stanford.edu/~yesavage/GDS.html GDS.PNG
Resource:GoSurfer University of Illinois at Urbana-Champaign; Illinois; USA
Harvard School of Public Health; Massachusetts; USA
http://bioinformatics.bioen.illinois.edu/gosurfer/index.htm GoSurfer.PNG
Resource:Hanalyzer University of Colorado Denver; Colorado; USA
Resource:SourceForge
http://hanalyzer.sourceforge.net/
Resource:Hardy-Weinberg Equilibrium Calculator http://www.oege.org/software/hwe-mr-calc.shtml
Resource:Human Protein-Protein Interaction Mining Tool Chinese Academy of Science; Lu Yongxiang; China http://liweilab.genetics.ac.cn/tm/
Resource:IgBLAST National Center for Biotechnology Information; National Library of Medicine; National Institutes of Health http://www.ncbi.nlm.nih.gov/igblast/
Resource:Integrated Content Environment University of Southern Queensland; Queensland; Australia http://ice.usq.edu.au/default.htm
Resource:KegTools Resource:KEGG http://www.kegg.jp/kegg/download/kegtools.html
Resource:Knowledge Engineering from Experimental Design Resource:Biomedical Informatics Research Network https://wiki.birncommunity.org/display/NEWBIRNCC/Knowledge+Engineering+from+Experimental+Design+%28%27KEfED%27%29 KEfED.PNG
Resource:LONI Pipeline Processing Environment David Geffen School of Medicine at UCLA; California; USA
Resource:UCLA: Laboratory of Neuro Imaging
http://pipeline.loni.ucla.edu LONI Pipeline.PNG
Resource:LONI Software Applications University of California at Los Angeles; California; USA http://www.loni.ucla.edu/Software/CCB/Type_Detail.jsp?type_id=1
Resource:NCI Flicker Web Server. National Cancer Institute http://www-lecb.ncifcrf.gov/flicker/
Resource:Neurogenetics Online http://www.nervenet.org
Resource:Neurophysiological Data Analysis Package http://www.neuroexplorer.com/
Resource:OBO-Edit Resource:GO http://oboedit.org/ OBO-Edit.PNG
Resource:PhenoTips University of Toronto; Ontario; Canada http://phenotips.cs.toronto.edu/ PhenoTips.PNG
Resource:Power Atlas University of Alabama at Birmingham; Alabama; USA http://www.poweratlas.org/
Resource:Publish or perish Harzing.com http://www.harzing.com/pop.htm Publish or Perish.PNG
Resource:Pythonxy Resource:Google App Engine - Google Code http://www.pythonxy.com Pythonxy.PNG
Resource:SHRINE Harvard Medical School; Massachusetts; USA https://open.med.harvard.edu/display/SHRINE/Community SHRINE.PNG
Resource:Sapienta ART project http://www.sapientaproject.com/ SAPIENTA.PNG
Resource:Statistics Online Computational Resource University of California at Los Angeles; California; USA http://www.socr.ucla.edu/ SOCR.PNG
Resource:Substructure Index-based Approximate Graph Alignment Resource:National Center for Integrative Biomedical Informatics
University of Michigan; Michigan; USA
http://portal.ncibi.org/gateway/saga.html SAGA.PNG
Resource:TARGETgene Resource:Biomedical Simulations Resource http://bmsr.usc.edu/software/targetgene/ TARGETgene.PNG
Resource:THOR Center for Neuroinformatics Technical University of Denmark; Copenhagen; Denmark http://isp.imm.dtu.dk/thor/
Resource:TheDataWeb and DataFerrett U.S. Census Bureau http://dataferrett.census.gov DataFerrett.PNG
Resource:TraDES Resource:Christopher Hogues Research Lab at the National University of Singapore https://sites.google.com/a/blueprint.org/trades/ TraDES.PNG
Resource:UNAFold University at Albany; New York; USA http://mfold.rna.albany.edu/
Resource:Utopia Documents University of Manchester; Manchester; United Kingdom http://utopiadocs.com/documents/
Resource:VIVO University of Florida; Florida; USA http://vivoweb.org/ VIVO.PNG
Resource:Wandora Grip Studios Interactive http://www.wandora.org/wandora/wiki/index.php?title=Main_Page Wandora.PNG
Resource:Wolfram Alpha Computational Knowledge Engine http://www.wolframalpha.com/
Resource:Yogo Data Management System Montana State University; Montana; USA http://yogo.msu.montana.edu/
Resource:brainmap.org University of Texas Health Science Center at San Antonio; Texas; USA http://brainmap.org/ BrainMap.PNG
Resource:caTRIP Resource:Cancer Biomedical Informatics Grid https://cabig.nci.nih.gov/tools/caTRIP CaTRIP.PNG
Resource:eCAT electronic lab notebook Axiope Limited http://www.axiope.com/electronic-lab-notebook
Resource:neurodebian Resource:Debian
Dartmouth College; New Hampshire; USA
Otto-von-Guericke University Magdeburg; Saxony-Anhalt; Germany
http://neuro.debian.net/ NeuroDebian.PNG
Resource:scrible http://www.scrible.com/#desktop Scrible.PNG
Resource:splitneuron MindUpload http://www.mindupload.org/index.php?tab=2&sub=0

Contributors

Aarnaud, Memartone, Nifbot2, Totsui



bookmark
Facts about Software applicationRDF feed
CurationStatusuncurated  +
DefinitionBinary executable is a digital entity cons Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions. (derived from Wikipedia, Nov 1, 2007) NITRC definition: Software programs designed to run on a computer. re programs designed to run on a computer.
Idbirnlex_11012  +
LabelSoftware application  +
ModifiedDate17 January 2013  +
SuperCategorySoftware resource  +
SynonymApplication  +, Binary executable  +, and Software program  +