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Category:Resource:InParanoid: Eukaryotic Ortholog Groups
Abbrev InParanoid  +
Address Department of Biochemistry and Biophysics  +, Stockholm Bioinformatics Centre  +, AlbaNova University Centre  +, Stockholm University  +, SE-10691 Stockholm  +, Sweden.  +
Availability Acknowledgement requested +
CurationStatus curated  +
DefiningCitation  +
Definition Collection of pairwise comparisons between Collection of pairwise comparisons between 100 whole genomes generated by a fully automatic method for finding orthologs and in-paralogs between TWO species. Ortholog clusters in the InParanoid are seeded with a two-way best pairwise match, after which an algorithm for adding in-paralogs is applied. The method bypasses multiple alignments and phylogenetic trees, which can be slow and error-prone steps in classical ortholog detection. Still, it robustly detects complex orthologous relationships and assigns confidence values for in-paralogs. The original data sets can be downloaded. The original data sets can be downloaded.
ExampleImage InParanoid.PNG +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +, Data analysis service +
Id nif-0000-03024  +
Is part of Stockholm University; Stockholm; Sweden +
Keywords Protein +, Ortholog +, Genome +, Drosophila pseudoobscura +, Duplication +, Entamoeba histolytica +, Escherichia colik12 +, Eukaryotic +, Gasterosteus aculeatus +, Gene +, Aedes aegypti +, Apis mellifera +, Bos taurus +, Caenorhabditis remanei +, Candida glabrata +, Canis familiaris +, Ciona intestinalis +, Cryptococcus neoformans +, Debaromyces hansenii +, Dictyostelium discoideum +, Genomic +, Homolog +, Inparalog +, Kluyveromyces lactis +, Macaca mulatta +, Monodelphis domestica +, Orthology +, Oryza sativa +, Outparalog +, Proteome +, Tetraodon nigroviridis +, Xenopus tropicalis +, BLAST +, Ortholog cluster +, Cluster +, In-paralog +, Paralog +, Automatic clustering +, Genome comparison +
Label Resource:InParanoid: Eukaryotic Ortholog Groups  +
Modification dateThis property is a special property in this wiki. 2 February 2015 06:51:37  +
ModifiedDate 2 February 2015  +
OldURL  +
PMID 19892828, 18055500, 15608241, 11743721  +
Page has default formThis property is a special property in this wiki. Resource  +
Species Escherichia coli +, Anopheles gambiae +, Caenorhabditis briggsae +, Caenorhabditis elegans +, Drosophila melanogaster +, Zebrafish +, Takifugu rubripes +, Chicken +, Human +, Mouse +, Chimpanzee +, Rat +, Oryza sativa +, Plasmodium falciparum +, Arabidopsis thaliana +, Saccharomyces cerevisiae +, Schizosaccharomyces pombe +, Eukaryota +
SuperCategory Resource  +
Supporting Agency Swedish Research Council +, Karolinska Institutet; Stockholm; Sweden +, Pfizer Corporation +
Synonym Inparanoid eukaryotic ortholog database  +
Categories Resource
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