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Category:Resource:InParanoid: Eukaryotic Ortholog Groups
Abbrev InParanoid  +
Address Department of Biochemistry and Biophysics  +, Stockholm Bioinformatics Centre  +, AlbaNova University Centre  +, Stockholm University  +, SE-10691 Stockholm  +, Sweden.  +
Availability Acknowledgement requested +
CurationStatus curated  +
DefiningCitation http://inparanoid.sbc.su.se/cgi-bin/index.cgi  +
Definition Collection of pairwise comparisons between Collection of pairwise comparisons between 100 whole genomes generated by a fully automatic method for finding orthologs and in-paralogs between TWO species. Ortholog clusters in the InParanoid are seeded with a two-way best pairwise match, after which an algorithm for adding in-paralogs is applied. The method bypasses multiple alignments and phylogenetic trees, which can be slow and error-prone steps in classical ortholog detection. Still, it robustly detects complex orthologous relationships and assigns confidence values for in-paralogs. The original data sets can be downloaded. The original data sets can be downloaded.
ExampleImage InParanoid.PNG +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +, Data analysis service +
Id nif-0000-03024  +
Is part of Stockholm University; Stockholm; Sweden +
Keywords Protein +, Ortholog +, Genome +, Drosophila pseudoobscura +, Duplication +, Entamoeba histolytica +, Escherichia colik12 +, Eukaryotic +, Gasterosteus aculeatus +, Gene +, Aedes aegypti +, Apis mellifera +, Bos taurus +, Caenorhabditis remanei +, Candida glabrata +, Canis familiaris +, Ciona intestinalis +, Cryptococcus neoformans +, Debaromyces hansenii +, Dictyostelium discoideum +, Genomic +, Homolog +, Inparalog +, Kluyveromyces lactis +, Macaca mulatta +, Monodelphis domestica +, Orthology +, Oryza sativa +, Outparalog +, Proteome +, Tetraodon nigroviridis +, Xenopus tropicalis +, BLAST +, Ortholog cluster +, Cluster +, In-paralog +, Paralog +, Automatic clustering +, Genome comparison +
Label Resource:InParanoid: Eukaryotic Ortholog Groups  +
Modification dateThis property is a special property in this wiki. 25 July 2014 23:00:21  +
ModifiedDate 25 July 2014  +
OldURL http://www.cgb.ki.se/inparanoid/  +
PMID 19892828, 18055500, 15608241, 11743721  +
Page has default formThis property is a special property in this wiki. Resource  +
Species Escherichia coli +, Anopheles gambiae +, Caenorhabditis briggsae +, Caenorhabditis elegans +, Drosophila melanogaster +, Zebrafish +, Takifugu rubripes +, Chicken +, Human +, Mouse +, Chimpanzee +, Rat +, Oryza sativa +, Plasmodium falciparum +, Arabidopsis thaliana +, Saccharomyces cerevisiae +, Schizosaccharomyces pombe +, Eukaryota +
SuperCategory Resource  +
Supporting Agency Swedish Research Council +, Karolinska Institutet; Stockholm; Sweden +, Pfizer Corporation +
Synonym Inparanoid eukaryotic ortholog database  +
Categories Resource
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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.