|
|
From NeuroLex
| Abbrev
|
InParanoid +
|
| Address
|
Department of Biochemistry and Biophysics +,
Stockholm Bioinformatics Centre +,
AlbaNova University Centre +,
Stockholm University +,
SE-10691 Stockholm +,
Sweden. +
|
| Availability
|
Please cite +
|
| CurationStatus
|
curated +
|
| DefiningCitation
|
http://inparanoid.sbc.su.se/cgi-bin/index.cgi +
|
| Definition
|
Collection of pairwise comparisons between … Collection of pairwise comparisons between 100 whole genomes generated by a fully automatic method for finding orthologs and in-paralogs between TWO species. Ortholog clusters in the InParanoid are seeded with a two-way best pairwise match, after which an algorithm for adding in-paralogs is applied. The method bypasses multiple alignments and phylogenetic trees, which can be slow and error-prone steps in classical ortholog detection. Still, it robustly detects complex orthologous relationships and assigns confidence values for in-paralogs. The original data sets can be downloaded. The original data sets can be downloaded.
|
| ExampleImage
|
InParanoid.PNG +
|
| Has default formThis property is a special property in this wiki.
|
Resource +
|
| Has role
|
Database +,
Data analysis service +
|
| Id
|
nif-0000-03024 +
|
| Is part of
|
Stockholm University; Stockholm; Sweden +
|
| Keywords
|
Protein +,
Ortholog +,
Genome +,
Drosophila pseudoobscura +,
Duplication +,
Entamoeba histolytica +,
Escherichia colik12 +,
Eukaryotic +,
Gasterosteus aculeatus +,
Gene +,
Aedes aegypti +,
Apis mellifera +,
Bos taurus +,
Caenorhabditis remanei +,
Candida glabrata +,
Canis familiaris +,
Ciona intestinalis +,
Cryptococcus neoformans +,
Debaromyces hansenii +,
Dictyostelium discoideum +,
Genomic +,
Homolog +,
Inparalog +,
Kluyveromyces lactis +,
Macaca mulatta +,
Monodelphis domestica +,
Orthology +,
Oryza sativa +,
Outparalog +,
Proteome +,
Tetraodon nigroviridis +,
Xenopus tropicalis +,
BLAST +,
Ortholog cluster +,
Cluster +,
In-paralog +,
Paralog +,
Automatic clustering +,
Genome comparison +
|
| Label
|
Resource:InParanoid: Eukaryotic Ortholog Groups +
|
| Modification dateThis property is a special property in this wiki.
|
18 March 2013 22:04:53 +
|
| ModifiedDate
|
18 March 2013 +
|
| PMID
|
19892828, 18055500, 15608241, 11743721 +
|
| Page has default formThis property is a special property in this wiki.
|
Resource +
|
| Species
|
Eukaryote +,
Escherichia coli +,
Anopheles gambiae +,
Caenorhabditis briggsae +,
Caenorhabditis elegans +,
Drosophila melanogaster +,
Zebrafish +,
Takifugu rubripes +,
Chicken +,
Human +,
Mouse +,
Chimpanzee +,
Rat +,
Oryza sativa +,
Plasmodium falciparum +,
Arabidopsis thaliana +,
Saccharomyces cerevisiae +,
Schizosaccharomyces pombe +
|
| SuperCategory
|
Resource +
|
| Supporting Agency
|
Swedish Research Council +,
Karolinska Institutet; Stockholm; Sweden +,
Pfizer Corporation +
|
| Synonym
|
Inparanoid eukaryotic ortholog database +
|
| Categories |
Resource
|
| | No properties link to this page. |
|---|
|
|
